RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 KREMEN2Q8NCW0 462 aa8.75□□□□□ -1.01
LIMS1-203ENST00000393310 KIAA1524Q8TCG1 905 aa8.75□□□□□ -1.01
LIMS1-203ENST00000393310 TNMDQ9H2S6 317 aa8.75□□□□□ -1.01
LIMS1-203ENST00000393310 DBNLQ9UJU6 430 aaKnown RBP8.75□□□□□ -1.01
LIMS1-203ENST00000393310 LZTS1Q9Y250 596 aa8.75□□□□□ -1.01
LIMS1-203ENST00000393310 SIT1Q9Y3P8 196 aa8.75□□□□□ -1.01
LIMS1-203ENST00000393310 PCDHAC2Q9Y5I4 1007 aa8.75□□□□□ -1.01
LIMS1-203ENST00000393310 CACNA1GO43497 2377 aa8.75□□□□□ -1.01
LIMS1-203ENST00000393310 PHF20L1A8MW92 1017 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 LGALS2P05162 132 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 FAM200BP0CF97 657 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 SP100P23497 879 aaPredicted RBP8.74□□□□□ -1.01
LIMS1-203ENST00000393310 HNRNPH2P55795 449 aaKnown RBP8.74□□□□□ -1.01
LIMS1-203ENST00000393310 SIM2Q14190 667 aaPredicted RBP8.74□□□□□ -1.01
LIMS1-203ENST00000393310 QRICH1Q2TAL8 776 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 NOMO2Q5JPE7 1267 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 TRIM68Q6AZZ1 485 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 ASTLQ6HA08 431 aaPredicted RBP8.74□□□□□ -1.01
LIMS1-203ENST00000393310 ATG9AQ7Z3C6 839 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 ZNF397Q8NF99 534 aaPredicted RBP8.74□□□□□ -1.01
LIMS1-203ENST00000393310 STRBPQ96SI9 672 aaKnown RBP8.74□□□□□ -1.01
LIMS1-203ENST00000393310 ANO3Q9BYT9 981 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 LNPKQ9C0E8 428 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 EPC1Q9H2F5 836 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 SETD4Q9NVD3 440 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 ATP8A1Q9Y2Q0 1164 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 H3BNC9 293 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 TCF3P15923 654 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 FSHRP23945 695 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 PTPN14Q15678 1187 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 TSNAXIP1Q2TAA8 658 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 CELF3Q5SZQ8 465 aaKnown RBP8.74□□□□□ -1.01
LIMS1-203ENST00000393310 RNF219Q5W0B1 726 aaPredicted RBP8.74□□□□□ -1.01
LIMS1-203ENST00000393310 POTEEQ6S8J3 1075 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 ZNF410Q86VK4 478 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 MYO1HQ8N1T3 1032 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 CYP2W1Q8TAV3 490 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 EDAQ92838 391 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 MKL1Q969V6 931 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 TMEM47Q9BQJ4 181 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 PRG3Q9Y2Y8 225 aaPredicted RBP8.74□□□□□ -1.01
LIMS1-203ENST00000393310 SF3B1O75533 1304 aaKnown RBP eCLIP8.74□□□□□ -1.015e-6■■■■■ 116.1
LIMS1-203ENST00000393310 SPECC1L-ADORA2AF8WAN1 911 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 FAM13AO94988 1023 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 SMARCA1P28370 1054 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 TCF7P36402 384 aaPredicted RBP8.74□□□□□ -1.01
LIMS1-203ENST00000393310 DYNC1I2Q13409 638 aaKnown RBP8.74□□□□□ -1.01
LIMS1-203ENST00000393310 POSTNQ15063 836 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 MAPK6Q16659 721 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 DCLRE1AQ6PJP8 1040 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 SRGAP1Q7Z6B7 1085 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 SPATA24Q86W54 205 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 RNF135Q8IUD6 432 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 CCAR2Q8N163 923 aaKnown RBP8.74□□□□□ -1.01
LIMS1-203ENST00000393310 PANK1Q8TE04 598 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 EAF2Q96CJ1 260 aaPredicted RBP8.74□□□□□ -1.01
LIMS1-203ENST00000393310 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.74□□□□□ -1.01
LIMS1-203ENST00000393310 NRDE2Q9H7Z3 1164 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 TNNQ9UQP3 1299 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 ZKSCAN5Q9Y2L8 839 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 COL1A2P08123 1366 aa8.74□□□□□ -1.01
LIMS1-203ENST00000393310 WNK3Q9BYP7 1800 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 AVPR2P30518 371 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 CRYBB1P53674 252 aaPredicted RBP8.73□□□□□ -1.01
LIMS1-203ENST00000393310 CNTN2Q02246 1040 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 LAMB3Q13751 1172 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 PABPC1LQ4VXU2 614 aaKnown RBP8.73□□□□□ -1.01
LIMS1-203ENST00000393310 RSPO2Q6UXX9 243 aaPredicted RBP8.73□□□□□ -1.01
LIMS1-203ENST00000393310 CPA6Q8N4T0 437 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 ZNF557Q8N988 423 aaPredicted RBP8.73□□□□□ -1.01
LIMS1-203ENST00000393310 ZSCAN1Q8NBB4 408 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 STKLD1Q8NE28 680 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 DSCC1Q9BVC3 393 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 USTQ9Y2C2 406 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 ANGPTL3Q9Y5C1 460 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 SMCO2A6NFE2 343 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 DIAPH2O60879 1101 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 ACADMP11310 421 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 RASA1P20936 1047 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 RPL10AP62906 217 aaKnown RBP8.73□□□□□ -1.01
LIMS1-203ENST00000393310 AMPD3Q01432 767 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 MAP3K10Q02779 954 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 CTDSPL2Q05D32 466 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 WASHC5Q12768 1159 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 ALX1Q15699 326 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 TPD52L1Q16890 204 aaPredicted RBP8.73□□□□□ -1.01
LIMS1-203ENST00000393310 FKBP15Q5T1M5 1219 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 CEP85Q6P2H3 762 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 NETO1Q8TDF5 533 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 SCFD1Q8WVM8 642 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 ZNF711Q9Y462 761 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.73□□□□□ -1.01
LIMS1-203ENST00000393310 MCM4P33991 863 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 MCCD1P59942 119 aaPredicted RBP8.73□□□□□ -1.01
LIMS1-203ENST00000393310 PURAQ00577 322 aaKnown RBP8.73□□□□□ -1.01
LIMS1-203ENST00000393310 SURF1Q15526 300 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 UAP1L1Q3KQV9 507 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 CCDC157Q569K6 752 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 TTC22Q5TAA0 569 aa8.73□□□□□ -1.01
LIMS1-203ENST00000393310 RTL10Q7L3V2 364 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms