RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 DHX35Q9H5Z1 703 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 CPB1P15086 417 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 TYK2P29597 1187 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 PIH1D3Q9NQM4 214 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 PCSK1NQ9UHG2 260 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 POTEB3A0JP26 581 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 PDHA1P08559 390 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 CDH2P19022 906 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 HMOX2P30519 316 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 GGCXP38435 758 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 STAT3P40763 770 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 RASGRF1Q13972 1273 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 DHX34Q14147 1143 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 ANKRD40Q6AI12 368 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 CC2D1AQ6P1N0 951 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 POTEBQ6S5H4 581 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 MTHFD1LQ6UB35 978 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 FAM217BQ9NTX9 383 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 TSR3Q9UJK0 312 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 NLRP1Q9C000 1473 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 ARAP3Q8WWN8 1544 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 PLEKHG2Q9H7P9 1386 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 CCDC78A2IDD5 438 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 SYDE1Q6ZW31 735 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 SPATA33Q96N06 139 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 TAF1DQ9H5J8 278 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 PKD2L2Q9NZM6 624 aa13.53□□□□□ -0.24
CCDC88C-204ENST00000389857 F5H423 210 aaPredicted RBP13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 ANGPT2O15123 496 aa13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 CCDC159P0C7I6 412 aa13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 PPP1R2P1Q96PQ5 205 aa13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 PIM2Q9P1W9 311 aa13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 WDR19Q8NEZ3 1342 aa13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 PNMA6AP0CW24 399 aaPredicted RBP13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 GFM2Q969S9 779 aaKnown RBP13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 A8MXQ7 604 aa13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 ALDH1A1P00352 501 aa13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 FCER1AP12319 257 aa13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 PDCLQ13371 301 aa13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 KCNV1Q6PIU1 500 aa13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 SARM1Q6SZW1 724 aa13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 TSPAN17Q96FV3 270 aa13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 FAM129AQ9BZQ8 928 aa13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 ZHX2Q9Y6X8 837 aa13.52□□□□□ -0.24
CCDC88C-204ENST00000389857 FTLP02792 175 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 OPTNQ96CV9 577 aa13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 PLEKHF1Q96S99 279 aa13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 SPON2Q9BUD6 331 aa13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 ZNF556Q9HAH1 456 aa13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 A0A087WWV3 80 aa13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 SERPINB4P48594 390 aa13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 CCDC137Q6PK04 289 aaKnown RBP13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 TNIP3Q96KP6 325 aa13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 TARSL2A2RTX5 802 aaKnown RBP13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 TLR2O60603 784 aa13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 BRAFP15056 766 aa13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 DRAP1Q14919 205 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 PLEKHM3Q6ZWE6 761 aa13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 TEX9Q8N6V9 391 aa13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 SAAL1Q96ER3 474 aa13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 RBAKQ9NYW8 714 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-204ENST00000389857 POTEMA6NI47 508 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 GOLGA8TH3BQL2 631 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 SLC1A1P43005 524 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 PSMC5P62195 406 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 KIF12Q96FN5 646 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 GRIK1P39086 918 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 RCAN1P53805 252 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 DUOXA2Q1HG44 320 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 SWSAP1Q6NVH7 229 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 ZSCAN32Q9NX65 697 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 GABBR1Q9UBS5 961 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 ZC3H4Q9UPT8 1303 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 HMGB3O15347 200 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 CUL3Q13618 768 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 DDX53Q86TM3 631 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 WRNIP1Q96S55 665 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 PALMDQ9NP74 551 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 FAM32AQ9Y421 112 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 TBC1D4O60343 1298 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 SRGAP2O75044 1071 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 LCP1P13796 627 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 PRCPP42785 496 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 PDAP1Q13442 181 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 SPATA2LQ8IUW3 424 aaPredicted RBP13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 WWP1Q9H0M0 922 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 TRAF3IP3Q9Y228 551 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 ARHGAP31Q2M1Z3 1444 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 USP17L10C9JJH3 530 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 MOCS2O96007 188 aaPredicted RBP13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 TPI1P60174 286 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 HIC1Q14526 733 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 PLEKHA5Q9HAU0 1116 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 CYP4F11Q9HBI6 524 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 UTYO14607 1347 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 HIF1AQ16665 826 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 CLEC4GQ6UXB4 293 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 TSPOAP1O95153 1857 aa13.51□□□□□ -0.25
CCDC88C-204ENST00000389857 HIST1H2AGP0C0S8 130 aaPredicted RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms