RNA–Protein interactions for RNA: ENST00000378725.3

SSU72-203, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-203ENST00000378725 RHOBTB3O94955 611 aa20.53■□□□□ 0.88
SSU72-203ENST00000378725 ARHGEF15O94989 841 aa20.53■□□□□ 0.88
SSU72-203ENST00000378725 LIG4P49917 911 aa20.53■□□□□ 0.88
SSU72-203ENST00000378725 FXR1P51114 621 aaKnown RBP eCLIP20.53■□□□□ 0.88
SSU72-203ENST00000378725 PNOCQ13519 176 aa20.53■□□□□ 0.88
SSU72-203ENST00000378725 SLC39A4Q6P5W5 647 aa20.53■□□□□ 0.88
SSU72-203ENST00000378725 HACE1Q8IYU2 909 aa20.53■□□□□ 0.88
SSU72-203ENST00000378725 BICD1Q96G01 975 aa20.53■□□□□ 0.88
SSU72-203ENST00000378725 HAPLN2Q9GZV7 340 aa20.53■□□□□ 0.88
SSU72-203ENST00000378725 NXF3Q9H4D5 531 aaKnown RBP20.53■□□□□ 0.88
SSU72-203ENST00000378725 TMEM206Q9H813 350 aa20.53■□□□□ 0.88
SSU72-203ENST00000378725 SLC39A2Q9NP94 309 aa20.53■□□□□ 0.88
SSU72-203ENST00000378725 EXOC1Q9NV70 894 aa20.53■□□□□ 0.88
SSU72-203ENST00000378725 EXOC7Q9UPT5 735 aa20.53■□□□□ 0.88
SSU72-203ENST00000378725 GIT1Q9Y2X7 761 aa20.53■□□□□ 0.88
SSU72-203ENST00000378725 COL4A6Q14031 1691 aa20.53■□□□□ 0.88
SSU72-203ENST00000378725 LINC01553A4QN01 128 aa20.52■□□□□ 0.88
SSU72-203ENST00000378725 TBKBP1A7MCY6 615 aa20.52■□□□□ 0.88
SSU72-203ENST00000378725 ANKRD63C9JTQ0 380 aa20.52■□□□□ 0.88
SSU72-203ENST00000378725 HNRNPDLO14979 420 aaKnown RBP20.52■□□□□ 0.88
SSU72-203ENST00000378725 INPPL1O15357 1258 aa20.52■□□□□ 0.88
SSU72-203ENST00000378725 CLDN3O15551 220 aa20.52■□□□□ 0.88
SSU72-203ENST00000378725 HOXD13P35453 343 aa20.52■□□□□ 0.88
SSU72-203ENST00000378725 TAP1Q03518 808 aa20.52■□□□□ 0.88
SSU72-203ENST00000378725 STK4Q13043 487 aa20.52■□□□□ 0.88
SSU72-203ENST00000378725 BTG3Q14201 252 aaPredicted RBP20.52■□□□□ 0.88
SSU72-203ENST00000378725 ZNF568Q3ZCX4 644 aa20.52■□□□□ 0.88
SSU72-203ENST00000378725 HELQQ8TDG4 1101 aa20.52■□□□□ 0.88
SSU72-203ENST00000378725 SCFD1Q8WVM8 642 aa20.52■□□□□ 0.88
SSU72-203ENST00000378725 CCDC47Q96A33 483 aaKnown RBP20.52■□□□□ 0.88
SSU72-203ENST00000378725 TCHPQ9BT92 498 aa20.52■□□□□ 0.88
SSU72-203ENST00000378725 RSAD1Q9HA92 442 aa20.52■□□□□ 0.88
SSU72-203ENST00000378725 SLC28A3Q9HAS3 691 aa20.52■□□□□ 0.88
SSU72-203ENST00000378725 A0A0B4J269 797 aa20.51■□□□□ 0.87
SSU72-203ENST00000378725 GOLGA6L22H0YM25 854 aa20.51■□□□□ 0.87
SSU72-203ENST00000378725 LINC00271P0C7V0 271 aa20.51■□□□□ 0.87
SSU72-203ENST00000378725 GRM5P41594 1212 aa20.51■□□□□ 0.87
SSU72-203ENST00000378725 BMT2Q1RMZ1 405 aa20.51■□□□□ 0.87
SSU72-203ENST00000378725 SLFN12LQ6IEE8 588 aa20.51■□□□□ 0.87
SSU72-203ENST00000378725 GLB1LQ6UWU2 654 aa20.51■□□□□ 0.87
SSU72-203ENST00000378725 ZBTB33Q86T24 672 aa20.51■□□□□ 0.87
SSU72-203ENST00000378725 ABI1Q8IZP0 508 aa20.51■□□□□ 0.87
SSU72-203ENST00000378725 FIBCD1Q8N539 461 aa20.51■□□□□ 0.87
SSU72-203ENST00000378725 CLP1Q92989 425 aaKnown RBP20.51■□□□□ 0.87
SSU72-203ENST00000378725 GSDMAQ96QA5 445 aa20.51■□□□□ 0.87
SSU72-203ENST00000378725 IKZF4Q9H2S9 585 aa20.51■□□□□ 0.87
SSU72-203ENST00000378725 SNTG2Q9NY99 539 aa20.51■□□□□ 0.87
SSU72-203ENST00000378725 PCDHA5Q9Y5H7 936 aa20.51■□□□□ 0.87
SSU72-203ENST00000378725 UBE4BO95155 1302 aa20.51■□□□□ 0.87
SSU72-203ENST00000378725 ZMYM2Q9UBW7 1377 aa20.5■□□□□ 0.87
SSU72-203ENST00000378725 SMC2O95347 1197 aa20.5■□□□□ 0.87
SSU72-203ENST00000378725 AKAP5P24588 427 aa20.5■□□□□ 0.87
SSU72-203ENST00000378725 NOLC1Q14978 699 aaKnown RBP eCLIP20.5■□□□□ 0.87
SSU72-203ENST00000378725 NOMO2Q5JPE7 1267 aa20.5■□□□□ 0.87
SSU72-203ENST00000378725 LRRC55Q6ZSA7 311 aa20.5■□□□□ 0.87
SSU72-203ENST00000378725 KIAA0895Q8NCT3 520 aa20.5■□□□□ 0.87
SSU72-203ENST00000378725 ZNF576Q9H609 170 aa20.5■□□□□ 0.87
SSU72-203ENST00000378725 ANKFY1Q9P2R3 1169 aa20.5■□□□□ 0.87
SSU72-203ENST00000378725 TRIOBPQ9H2D6 2365 aa20.5■□□□□ 0.87
SSU72-203ENST00000378725 ADSSP30520 456 aa20.49■□□□□ 0.87
SSU72-203ENST00000378725 ERVK-21P61565 698 aa20.49■□□□□ 0.87
SSU72-203ENST00000378725 PAN2Q504Q3 1202 aaKnown RBP20.49■□□□□ 0.87
SSU72-203ENST00000378725 PPP2R2DQ66LE6 453 aa20.49■□□□□ 0.87
SSU72-203ENST00000378725 SYCP3Q8IZU3 236 aa20.49■□□□□ 0.87
SSU72-203ENST00000378725 CEP120Q8N960 986 aa20.49■□□□□ 0.87
SSU72-203ENST00000378725 GSTCDQ8NEC7 633 aa20.49■□□□□ 0.87
SSU72-203ENST00000378725 GAD1Q99259 594 aa20.49■□□□□ 0.87
SSU72-203ENST00000378725 APOL6Q9BWW8 343 aa20.49■□□□□ 0.87
SSU72-203ENST00000378725 TTYH1Q9H313 450 aaPredicted RBP20.49■□□□□ 0.87
SSU72-203ENST00000378725 CWH43Q9H720 699 aa20.49■□□□□ 0.87
SSU72-203ENST00000378725 TYW1Q9NV66 732 aaKnown RBP20.49■□□□□ 0.87
SSU72-203ENST00000378725 KANSL3Q9P2N6 904 aa20.49■□□□□ 0.87
SSU72-203ENST00000378725 PARP2Q9UGN5 583 aa20.49■□□□□ 0.87
SSU72-203ENST00000378725 MRPL42Q9Y6G3 142 aaKnown RBP20.49■□□□□ 0.87
SSU72-203ENST00000378725 ARL5CA6NH57 179 aa20.48■□□□□ 0.87
SSU72-203ENST00000378725 TISP43B9A030 160 aa20.48■□□□□ 0.87
SSU72-203ENST00000378725 TGFB1I1O43294 461 aa20.48■□□□□ 0.87
SSU72-203ENST00000378725 FAM189A1O60320 539 aa20.48■□□□□ 0.87
SSU72-203ENST00000378725 RECQL4O94761 1208 aa20.48■□□□□ 0.87
SSU72-203ENST00000378725 AFF1P51825 1210 aaKnown RBP20.48■□□□□ 0.87
SSU72-203ENST00000378725 KYAT1Q16773 422 aa20.48■□□□□ 0.87
SSU72-203ENST00000378725 ALKAL1Q6UXT8 129 aa20.48■□□□□ 0.87
SSU72-203ENST00000378725 THNSL1Q8IYQ7 743 aa20.48■□□□□ 0.87
SSU72-203ENST00000378725 ERCC4Q92889 916 aaPredicted RBP20.48■□□□□ 0.87
SSU72-203ENST00000378725 SMARCE1Q969G3 411 aa20.48■□□□□ 0.87
SSU72-203ENST00000378725 TGS1Q96RS0 853 aaKnown RBP20.48■□□□□ 0.87
SSU72-203ENST00000378725 CCDC94Q9BW85 323 aaPredicted RBP20.48■□□□□ 0.87
SSU72-203ENST00000378725 MRPL9Q9BYD2 267 aaKnown RBP20.48■□□□□ 0.87
SSU72-203ENST00000378725 SEMA6BQ9H3T3 888 aa20.48■□□□□ 0.87
SSU72-203ENST00000378725 RMND1Q9NWS8 449 aa20.48■□□□□ 0.87
SSU72-203ENST00000378725 MIOSQ9NXC5 875 aa20.48■□□□□ 0.87
SSU72-203ENST00000378725 OGTO15294 1046 aa20.47■□□□□ 0.87
SSU72-203ENST00000378725 GARTP22102 1010 aa20.47■□□□□ 0.87
SSU72-203ENST00000378725 MLH1P40692 756 aa20.47■□□□□ 0.87
SSU72-203ENST00000378725 MATR3P43243 847 aaKnown RBP eCLIP20.47■□□□□ 0.87
SSU72-203ENST00000378725 SNRPFP62306 86 aaKnown RBP20.47■□□□□ 0.87
SSU72-203ENST00000378725 KNOP1Q1ED39 458 aaKnown RBP20.47■□□□□ 0.87
SSU72-203ENST00000378725 XKR4Q5GH76 650 aa20.47■□□□□ 0.87
SSU72-203ENST00000378725 ZNF697Q5TEC3 545 aa20.47■□□□□ 0.87
SSU72-203ENST00000378725 TMEM192Q8IY95 271 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms