RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CENPVL1A0A0U1RR11 272 aa3.15□□□□□ -1.91
VPS13A-206ENST00000376646 FOXN1O15353 648 aa3.15□□□□□ -1.91
VPS13A-206ENST00000376646 NRP2O60462 931 aa3.15□□□□□ -1.91
VPS13A-206ENST00000376646 LTA4HP09960 611 aaKnown RBP3.15□□□□□ -1.91
VPS13A-206ENST00000376646 TGM1P22735 817 aa3.15□□□□□ -1.91
VPS13A-206ENST00000376646 ADSLP30566 484 aaPredicted RBP3.15□□□□□ -1.91
VPS13A-206ENST00000376646 GPR15P49685 360 aa3.15□□□□□ -1.91
VPS13A-206ENST00000376646 INHBEP58166 350 aa3.15□□□□□ -1.91
VPS13A-206ENST00000376646 RNASE9P60153 205 aaKnown RBP3.15□□□□□ -1.91
VPS13A-206ENST00000376646 MFSD14BQ5SR56 506 aa3.15□□□□□ -1.91
VPS13A-206ENST00000376646 GIMAP6Q6P9H5 292 aa3.15□□□□□ -1.91
VPS13A-206ENST00000376646 BTNL9Q6UXG8 535 aa3.15□□□□□ -1.91
VPS13A-206ENST00000376646 LHFPL2Q6ZUX7 228 aa3.15□□□□□ -1.91
VPS13A-206ENST00000376646 SLC35B2Q8TB61 432 aa3.15□□□□□ -1.91
VPS13A-206ENST00000376646 NDC1Q9BTX1 674 aa3.15□□□□□ -1.91
VPS13A-206ENST00000376646 ABHD16AO95870 558 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 PEX11BO96011 259 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 PROZP22891 400 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 SCAND1P57086 179 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 NANOS3P60323 173 aaKnown RBP3.14□□□□□ -1.91
VPS13A-206ENST00000376646 NHLH2Q02577 135 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 UGT8Q16880 541 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 PRAMEF14Q5SWL7 426 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 KCNV1Q6PIU1 500 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 LRRC55Q6ZSA7 311 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 SYNE4Q8N205 404 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 SNX33Q8WV41 574 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 PHACTR3Q96KR7 559 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 CDC5LQ99459 802 aaKnown RBP3.14□□□□□ -1.91
VPS13A-206ENST00000376646 QRSL1Q9H0R6 528 aaKnown RBP3.14□□□□□ -1.91
VPS13A-206ENST00000376646 IFT22Q9H7X7 185 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 DMRT3Q9NQL9 472 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 MAPRE3Q9UPY8 281 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 MAP3K2Q9Y2U5 619 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 HS3ST4Q9Y661 456 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 UNC119BA6NIH7 251 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 PRR5-ARHGAP8B1AHC4 643 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 NDUFA10O95299 355 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 ITGB1P05556 798 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 GYPEP15421 78 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 DHCR24Q15392 516 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.14□□□□□ -1.91
VPS13A-206ENST00000376646 PLEKHG4Q58EX7 1191 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 DDX46Q7L014 1031 aaKnown RBP3.14□□□□□ -1.91
VPS13A-206ENST00000376646 GPRIN1Q7Z2K8 1008 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 BEND2Q8NDZ0 799 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 OR10H5Q8NGA6 315 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 TSPEARQ8WU66 669 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 LENG9Q96B70 501 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 NEU1Q99519 415 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 TTC1Q99614 292 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 GPRC5DQ9NZD1 345 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 KCNG1Q9UIX4 513 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 FZD1Q9UP38 647 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 CHST2Q9Y4C5 530 aa3.14□□□□□ -1.91
VPS13A-206ENST00000376646 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.13□□□□□ -1.91
VPS13A-206ENST00000376646 RECQL4O94761 1208 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 HSP90B1P14625 803 aaKnown RBP3.13□□□□□ -1.91
VPS13A-206ENST00000376646 ENPP1P22413 925 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 WNT3AP56704 352 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 FSCN1Q16658 493 aaKnown RBP3.13□□□□□ -1.91
VPS13A-206ENST00000376646 TIGD2Q4W5G0 525 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 PDCD4Q53EL6 469 aaKnown RBP3.13□□□□□ -1.91
VPS13A-206ENST00000376646 CCDC178Q5BJE1 867 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 Q6ZVL8 140 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 DOK3Q7L591 496 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 GDF7Q7Z4P5 450 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 STON2Q8WXE9 905 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 ZG16BQ96DA0 208 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 FAM126AQ9BYI3 521 aaPredicted RBP3.13□□□□□ -1.91
VPS13A-206ENST00000376646 AKIP1Q9NQ31 210 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 POGKQ9P215 609 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 SHROOM4Q9ULL8 1493 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 GRID2IPA4D2P6 1211 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 TRIM24O15164 1050 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 AKR1B10O60218 316 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 LAG3P18627 525 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 BMP5P22003 454 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 PTPN7P35236 360 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 TMPRSS15P98073 1019 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 RIN2Q8WYP3 895 aaPredicted RBP3.13□□□□□ -1.91
VPS13A-206ENST00000376646 TFAP2CQ92754 450 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 PRRX2Q99811 253 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 PDCD2LQ9BRP1 358 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 LDAHQ9H6V9 325 aa3.13□□□□□ -1.91
VPS13A-206ENST00000376646 GOLGA8AA7E2F4 631 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 TBKBP1A7MCY6 615 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 GCP02774 474 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 ZSCAN20P17040 1043 aaPredicted RBP3.12□□□□□ -1.91
VPS13A-206ENST00000376646 SRSF2Q01130 221 aaKnown RBP3.12□□□□□ -1.91
VPS13A-206ENST00000376646 PTPAQ15257 358 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 LY6G5CQ5SRR4 150 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 COG1Q8WTW3 980 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 WDR11Q9BZH6 1224 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 WNT8AQ9H1J5 351 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 USP15Q9Y4E8 981 aaPredicted RBP3.12□□□□□ -1.91
VPS13A-206ENST00000376646 PNPLA7Q6ZV29 1317 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 TMEM191CA6NGB0 347 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 CHN2P52757 468 aa3.12□□□□□ -1.91
VPS13A-206ENST00000376646 SESN3P58005 492 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms