RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 ALG13Q9NP73 1137 aaKnown RBP16.1■□□□□ 0.17
COL5A1-201ENST00000371817 ABCC1P33527 1531 aa16.1■□□□□ 0.17
COL5A1-201ENST00000371817 FRMPD2Q68DX3 1309 aaPredicted RBP16.1■□□□□ 0.17
COL5A1-201ENST00000371817 C1orf232A0A0U1RR37 186 aa16.1■□□□□ 0.17
COL5A1-201ENST00000371817 F8VZ95 297 aa16.1■□□□□ 0.17
COL5A1-201ENST00000371817 C21orf59P57076 290 aa16.1■□□□□ 0.17
COL5A1-201ENST00000371817 OTUD4Q01804 1114 aaKnown RBP16.1■□□□□ 0.17
COL5A1-201ENST00000371817 MXD4Q14582 209 aaPredicted RBP16.1■□□□□ 0.17
COL5A1-201ENST00000371817 PDZK1Q5T2W1 519 aa16.1■□□□□ 0.17
COL5A1-201ENST00000371817 ATXN3P54252 364 aaPredicted RBP16.1■□□□□ 0.17
COL5A1-201ENST00000371817 XPO6Q96QU8 1125 aaKnown RBP16.1■□□□□ 0.17
COL5A1-201ENST00000371817 MLPHQ9BV36 600 aaPredicted RBP16.1■□□□□ 0.17
COL5A1-201ENST00000371817 NUP85Q9BW27 656 aa16.1■□□□□ 0.17
COL5A1-201ENST00000371817 GCC2Q8IWJ2 1684 aa16.1■□□□□ 0.17
COL5A1-201ENST00000371817 PIPSLA2A3N6 862 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 USP27XA6NNY8 438 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 POLR2MP0CAP2 368 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 LRRC41Q15345 812 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 TRIQKQ629K1 86 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 NSMFQ6X4W1 530 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 DHX36Q9H2U1 1008 aaKnown RBP16.09■□□□□ 0.17
COL5A1-201ENST00000371817 MRC2Q9UBG0 1479 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 KRT24Q2M2I5 525 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 ACAP3Q96P50 834 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 MLXIPQ9HAP2 919 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 CASS4Q9NQ75 786 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 PCDHA4Q9UN74 947 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 DDHD2O94830 711 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 ERICH1Q86X53 443 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 PAGE5Q96GU1 130 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 NOL6Q9H6R4 1146 aaKnown RBP16.09■□□□□ 0.17
COL5A1-201ENST00000371817 MRPL39Q9NYK5 338 aaKnown RBP16.09■□□□□ 0.17
COL5A1-201ENST00000371817 CENPXA8MT69 81 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 KCNA2P16389 499 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 COPAP53621 1224 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 UNC45AQ9H3U1 944 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 PSTPIP1O43586 416 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 YY1P25490 414 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 CUL4AQ13619 759 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 EIF4A2Q14240 407 aaKnown RBP16.09■□□□□ 0.17
COL5A1-201ENST00000371817 HEMGNQ9BXL5 484 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 PNMA8CA0A1B0GUJ8 204 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 GOLGA8JA6NMD2 632 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 PSMA3P25788 255 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 TFAMQ00059 246 aaKnown RBP16.09■□□□□ 0.17
COL5A1-201ENST00000371817 PAIP1Q9H074 479 aaKnown RBP16.09■□□□□ 0.17
COL5A1-201ENST00000371817 HSPBP1Q9NZL4 362 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 CDY2AQ9Y6F7 541 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 CDY1Q9Y6F8 540 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 MYH7P12883 1935 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 RIMBP2O15034 1052 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 CALB1P05937 261 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 PLCG1P19174 1290 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 GJA8P48165 433 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 CHURC1Q8WUH1 139 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 MIEF2Q96C03 454 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 SUGCTQ9HAC7 445 aa16.09■□□□□ 0.17
COL5A1-201ENST00000371817 ATP1A1P05023 1023 aaKnown RBP16.08■□□□□ 0.17
COL5A1-201ENST00000371817 PDAP1Q13442 181 aaKnown RBP16.08■□□□□ 0.17
COL5A1-201ENST00000371817 RESP18Q5W5W9 173 aa16.08■□□□□ 0.17
COL5A1-201ENST00000371817 PIGOQ8TEQ8 1089 aa16.08■□□□□ 0.17
COL5A1-201ENST00000371817 MAPKBP1O60336 1514 aa16.08■□□□□ 0.17
COL5A1-201ENST00000371817 TNKSO95271 1327 aa16.08■□□□□ 0.17
COL5A1-201ENST00000371817 FGAP02671 866 aa16.08■□□□□ 0.17
COL5A1-201ENST00000371817 PDCD6IPQ8WUM4 868 aaKnown RBP16.08■□□□□ 0.17
COL5A1-201ENST00000371817 PTPN12Q05209 780 aaKnown RBP16.08■□□□□ 0.16
COL5A1-201ENST00000371817 COX10Q12887 443 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 Q4G0T1 1027 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 KLHL23Q8NBE8 558 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 TGFBRAP1Q8WUH2 860 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 WDR60Q8WVS4 1066 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 FAM129AQ9BZQ8 928 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 KMT5AQ9NQR1 393 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 AMACRQ9UHK6 382 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 R3HDM2Q9Y2K5 976 aaKnown RBP16.08■□□□□ 0.16
COL5A1-201ENST00000371817 MRPL11Q9Y3B7 192 aaKnown RBP16.08■□□□□ 0.16
COL5A1-201ENST00000371817 ADGRG1Q9Y653 693 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 STON1Q9Y6Q2 735 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 SKAP2O75563 359 aaPredicted RBP16.08■□□□□ 0.16
COL5A1-201ENST00000371817 BAIAP3O94812 1187 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 MMP1P03956 469 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 PTGISQ16647 500 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 KRT77Q7Z794 578 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 PLBD2Q8NHP8 589 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 UBASH3BQ8TF42 649 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 WDR24Q96S15 920 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 UBE2OQ9C0C9 1292 aaKnown RBP16.08■□□□□ 0.16
COL5A1-201ENST00000371817 EMILIN3Q9NT22 766 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 PSMC3IPQ9P2W1 217 aaPredicted RBP16.08■□□□□ 0.16
COL5A1-201ENST00000371817 MARCOQ9UEW3 520 aaPredicted RBP16.08■□□□□ 0.16
COL5A1-201ENST00000371817 SEPT9Q9UHD8 586 aaPredicted RBP16.08■□□□□ 0.16
COL5A1-201ENST00000371817 ACEP12821 1306 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 BLMP54132 1417 aaPredicted RBP16.08■□□□□ 0.16
COL5A1-201ENST00000371817 SFI1A8K8P3 1242 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 ZAP70P43403 619 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 C6orf10Q5SRN2 563 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 NDUFAF2Q8N183 169 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 PI4K2BQ8TCG2 481 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 APOL4Q9BPW4 351 aa16.08■□□□□ 0.16
COL5A1-201ENST00000371817 LRRC1Q9BTT6 524 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms