RNA–Protein interactions for RNA: ENST00000367740.2

VAMP4-202, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VAMP4, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-202ENST00000367740 PLEKHM2Q8IWE5 1019 aa16.49■□□□□ 0.23
VAMP4-202ENST00000367740 IER2Q9BTL4 223 aa16.49■□□□□ 0.23
VAMP4-202ENST00000367740 TMEM121BQ9BXQ6 578 aaPredicted RBP16.49■□□□□ 0.23
VAMP4-202ENST00000367740 GPR62Q9BZJ7 368 aa16.49■□□□□ 0.23
VAMP4-202ENST00000367740 INO80BQ9C086 356 aaPredicted RBP16.49■□□□□ 0.23
VAMP4-202ENST00000367740 OSBPL3Q9H4L5 887 aa16.49■□□□□ 0.23
VAMP4-202ENST00000367740 RXFP3Q9NSD7 469 aa16.49■□□□□ 0.23
VAMP4-202ENST00000367740 NRBP2Q9NSY0 501 aa16.49■□□□□ 0.23
VAMP4-202ENST00000367740 HNRNPA1P09651 372 aaKnown RBP eCLIP16.48■□□□□ 0.23
VAMP4-202ENST00000367740 SATB1Q01826 763 aa16.48■□□□□ 0.23
VAMP4-202ENST00000367740 PTH1RQ03431 593 aa16.48■□□□□ 0.23
VAMP4-202ENST00000367740 SF3A2Q15428 464 aaKnown RBP16.48■□□□□ 0.23
VAMP4-202ENST00000367740 UBXN11Q5T124 520 aa16.48■□□□□ 0.23
VAMP4-202ENST00000367740 GPR65Q8IYL9 337 aa16.48■□□□□ 0.23
VAMP4-202ENST00000367740 CEP89Q96ST8 783 aa16.48■□□□□ 0.23
VAMP4-202ENST00000367740 PLA2G2FQ9BZM2 168 aa16.48■□□□□ 0.23
VAMP4-202ENST00000367740 PDCD11Q14690 1871 aaKnown RBP16.48■□□□□ 0.23
VAMP4-202ENST00000367740 SPAG17Q6Q759 2223 aa16.47■□□□□ 0.23
VAMP4-202ENST00000367740 CNTNAP5Q8WYK1 1306 aa16.47■□□□□ 0.23
VAMP4-202ENST00000367740 IGKV6-21A0A0C4DH24 114 aa16.47■□□□□ 0.23
VAMP4-202ENST00000367740 WDR64B1ANS9 1081 aa16.47■□□□□ 0.23
VAMP4-202ENST00000367740 CHURC1-FNTBB4DL54 471 aa16.47■□□□□ 0.23
VAMP4-202ENST00000367740 CCL16O15467 120 aa16.47■□□□□ 0.23
VAMP4-202ENST00000367740 ECI2O75521 394 aa16.47■□□□□ 0.23
VAMP4-202ENST00000367740 KCNK5O95279 499 aa16.47■□□□□ 0.23
VAMP4-202ENST00000367740 CYP3A4P08684 503 aa16.47■□□□□ 0.23
VAMP4-202ENST00000367740 NCLP19338 710 aaKnown RBP16.47■□□□□ 0.23
VAMP4-202ENST00000367740 FNTBP49356 437 aa16.47■□□□□ 0.23
VAMP4-202ENST00000367740 SETQ01105 290 aaPredicted RBP16.47■□□□□ 0.23
VAMP4-202ENST00000367740 USP41Q3LFD5 358 aa16.47■□□□□ 0.23
VAMP4-202ENST00000367740 FUT10Q6P4F1 479 aa16.47■□□□□ 0.23
VAMP4-202ENST00000367740 RHPN2Q8IUC4 686 aa16.47■□□□□ 0.23
VAMP4-202ENST00000367740 KSR1Q8IVT5 923 aa16.47■□□□□ 0.23
VAMP4-202ENST00000367740 FAM160A2Q8N612 972 aaPredicted RBP16.47■□□□□ 0.23
VAMP4-202ENST00000367740 DNASE1L2Q92874 299 aa16.47■□□□□ 0.23
VAMP4-202ENST00000367740 ASH1LQ9NR48 2969 aaKnown RBP16.47■□□□□ 0.23
VAMP4-202ENST00000367740 TMEM150BA6NC51 233 aa16.46■□□□□ 0.23
VAMP4-202ENST00000367740 CCDC69A6NI79 296 aa16.46■□□□□ 0.23
VAMP4-202ENST00000367740 SH2B2O14492 632 aaPredicted RBP16.46■□□□□ 0.23
VAMP4-202ENST00000367740 C8AP07357 584 aa16.46■□□□□ 0.23
VAMP4-202ENST00000367740 HOXA9P31269 272 aa16.46■□□□□ 0.23
VAMP4-202ENST00000367740 CREMQ03060 361 aa16.46■□□□□ 0.23
VAMP4-202ENST00000367740 HDAC1Q13547 482 aaPredicted RBP16.46■□□□□ 0.23
VAMP4-202ENST00000367740 MTERF2Q49AM1 385 aa16.46■□□□□ 0.23
VAMP4-202ENST00000367740 PPM1LQ5SGD2 360 aa16.46■□□□□ 0.23
VAMP4-202ENST00000367740 LIN9Q5TKA1 542 aa16.46■□□□□ 0.23
VAMP4-202ENST00000367740 PRSS55Q6UWB4 352 aaPredicted RBP16.46■□□□□ 0.23
VAMP4-202ENST00000367740 LRSAM1Q6UWE0 723 aa16.46■□□□□ 0.23
VAMP4-202ENST00000367740 NFXL1Q6ZNB6 911 aa16.46■□□□□ 0.23
VAMP4-202ENST00000367740 SMG8Q8ND04 991 aaKnown RBP16.46■□□□□ 0.23
VAMP4-202ENST00000367740 ING5Q8WYH8 240 aa16.46■□□□□ 0.23
VAMP4-202ENST00000367740 NLRP4Q96MN2 994 aa16.46■□□□□ 0.23
VAMP4-202ENST00000367740 IFT122Q9HBG6 1241 aa16.46■□□□□ 0.23
VAMP4-202ENST00000367740 DISC1Q9NRI5 854 aa16.46■□□□□ 0.23
VAMP4-202ENST00000367740 HCFC1R1Q9NWW0 138 aa16.46■□□□□ 0.23
VAMP4-202ENST00000367740 POLIQ9UNA4 740 aa16.46■□□□□ 0.23
VAMP4-202ENST00000367740 FREM2Q5SZK8 3169 aa16.46■□□□□ 0.22
VAMP4-202ENST00000367740 VWA8A3KMH1 1905 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 SMCO2A6NFE2 343 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 ARL5CA6NH57 179 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 SRRM3A6NNA2 597 aaPredicted RBP16.45■□□□□ 0.22
VAMP4-202ENST00000367740 CALM1P0DP23 149 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 CALM2P0DP24 149 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 CALM3P0DP25 149 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 HOXA11P31270 313 aaPredicted RBP16.45■□□□□ 0.22
VAMP4-202ENST00000367740 CNR2P34972 360 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 MLH1P40692 756 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 SCNN1GP51170 649 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 RING1Q06587 406 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 GAS6Q14393 721 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 RTP2Q5QGT7 225 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 STPG1Q5TH74 334 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 CASC1Q6TDU7 716 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 SH2D3AQ9BRG2 576 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 MIOSQ9NXC5 875 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 SUCLA2Q9P2R7 463 aaPredicted RBP16.45■□□□□ 0.22
VAMP4-202ENST00000367740 SEPT9Q9UHD8 586 aaPredicted RBP16.45■□□□□ 0.22
VAMP4-202ENST00000367740 WASF3Q9UPY6 502 aa16.45■□□□□ 0.22
VAMP4-202ENST00000367740 MAN2B1O00754 1011 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 PRC1O43663 620 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 XYLBO75191 536 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 CXCL12P48061 93 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 DNM2P50570 870 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 CCDC6Q16204 474 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 JAKMIP3Q5VZ66 844 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 PSAPL1Q6NUJ1 521 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 C12orf50Q8NA57 414 aaPredicted RBP16.44■□□□□ 0.22
VAMP4-202ENST00000367740 LENG9Q96B70 501 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 ZFP42Q96MM3 310 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 GAD1Q99259 594 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 MTA3Q9BTC8 594 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 LSM14BQ9BX40 385 aaKnown RBP16.44■□□□□ 0.22
VAMP4-202ENST00000367740 MINDY3Q9H8M7 445 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 LMAN1LQ9HAT1 526 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 DNMT3BQ9UBC3 853 aaKnown RBP16.44■□□□□ 0.22
VAMP4-202ENST00000367740 ADAM28Q9UKQ2 775 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 KCNH3Q9ULD8 1083 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 LHX6Q9UPM6 363 aa16.44■□□□□ 0.22
VAMP4-202ENST00000367740 FLNBO75369 2602 aaKnown RBP16.43■□□□□ 0.22
VAMP4-202ENST00000367740 TMEM8BA6NDV4 472 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms