RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 PRMT1Q99873 361 aaKnown RBP7.72□□□□□ -1.17
SYNE1-208ENST00000367256 ZNF556Q9HAH1 456 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 GID8Q9NWU2 228 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 CDC42BPAQ5VT25 1732 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 ITIH6Q6UXX5 1313 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 LRRC53A6NM62 1247 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 APOL1O14791 398 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 PDE8BO95263 885 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 ACADSP16219 412 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 TRADDQ15628 312 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 SMAD1Q15797 465 aaKnown RBP7.72□□□□□ -1.17
SYNE1-208ENST00000367256 ZNF589Q86UQ0 364 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-208ENST00000367256 RAB42Q8N4Z0 105 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 POLIQ9UNA4 740 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 GOLGA8IPA6NC78 632 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 GOLGA8JA6NMD2 632 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 AP3B1O00203 1094 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 PHKA2P46019 1235 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 ATXN7L3BQ96GX2 97 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 USP15Q9Y4E8 981 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-208ENST00000367256 GOLGA8TH3BQL2 631 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 ADCY3O60266 1144 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 ATP1A3P13637 1013 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 HSPA2P54652 639 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 CORO7P57737 925 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 RNF135Q8IUD6 432 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 ZHX2Q9Y6X8 837 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 ABCB11O95342 1321 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 MDH1P40925 334 aaKnown RBP7.72□□□□□ -1.17
SYNE1-208ENST00000367256 TMED10P49755 219 aaKnown RBP7.72□□□□□ -1.17
SYNE1-208ENST00000367256 THEMIS2Q5TEJ8 643 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 CDKL3Q8IVW4 592 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-208ENST00000367256 PPM1NQ8N819 430 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 OR6B3Q8NGW1 331 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 NDFIP2Q9NV92 336 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 GDAQ9Y2T3 454 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 SNX24Q9Y343 169 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 MAGI2Q86UL8 1455 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 PHKA1P46020 1223 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 TNFAIP2Q03169 654 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 ARHGEF6Q15052 776 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 ADRM1Q16186 407 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 RRM2BQ7LG56 351 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 DNAJC10Q8IXB1 793 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 MRPL1Q9BYD6 325 aaKnown RBP7.72□□□□□ -1.17
SYNE1-208ENST00000367256 SLC13A1Q9BZW2 595 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 ERVK-7P63135 1459 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 ENO1P06733 434 aaKnown RBP7.72□□□□□ -1.17
SYNE1-208ENST00000367256 KCNA3P22001 575 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 TBXAS1P24557 533 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-208ENST00000367256 SERPINB1P30740 379 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 GUCY1A3Q02108 690 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 RUNX1T1Q06455 604 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 LRRC24Q50LG9 513 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 CENPPQ6IPU0 288 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 RFX8Q6ZV50 586 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 FMR1NBQ8N0W7 255 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-208ENST00000367256 CHAMP1Q96JM3 812 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 CCT8L2Q96SF2 557 aa7.72□□□□□ -1.17
SYNE1-208ENST00000367256 DENND3A2RUS2 1198 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 CDH16O75309 829 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 FGFR4P22455 802 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 ABCE1P61221 599 aaKnown RBP7.71□□□□□ -1.17
SYNE1-208ENST00000367256 EFHC2Q5JST6 749 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 C16orf89Q6UX73 402 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 SPATA21Q7Z572 469 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 FAM162AQ96A26 154 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 TSSK1BQ9BXA7 367 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 FAM49AQ9H0Q0 323 aaPredicted RBP7.71□□□□□ -1.17
SYNE1-208ENST00000367256 MAP3K15Q6ZN16 1313 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 SPAG6O75602 509 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 TCF3P15923 654 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 ANGPT1Q15389 498 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 DSTYKQ6XUX3 929 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 SETD3Q86TU7 594 aaPredicted RBP7.71□□□□□ -1.17
SYNE1-208ENST00000367256 HORMAD1Q86X24 394 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 RIBC1Q8N443 379 aaPredicted RBP7.71□□□□□ -1.17
SYNE1-208ENST00000367256 RFWD2Q8NHY2 731 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 IP6K2Q9UHH9 426 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 ADD2P35612 726 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 AP3B2Q13367 1082 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 SYTL3Q4VX76 610 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 FLCNQ8NFG4 579 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 SCFD1Q8WVM8 642 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 CMTM5Q96DZ9 223 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 PLEKHF1Q96S99 279 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 AIPL1Q9NZN9 384 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 PITPNM2Q9BZ72 1349 aa7.71□□□□□ -1.17
SYNE1-208ENST00000367256 MYH13Q9UKX3 1938 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 TCP11X1B4DZS4 312 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 MYL3P08590 195 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 SDC4P31431 198 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 NECTIN1Q15223 517 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 DCAF4L1Q3SXM0 396 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 SRPK1Q96SB4 655 aaKnown RBP7.71□□□□□ -1.18
SYNE1-208ENST00000367256 C17orf80Q9BSJ5 609 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 TRIM54Q9BYV2 358 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 ITSN1Q15811 1721 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 CASZ1Q86V15 1759 aa7.71□□□□□ -1.18
SYNE1-208ENST00000367256 UBXN8O00124 270 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms