RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 DGKZQ13574 1117 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 PPP2R5AQ15172 486 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 SGO2Q562F6 1265 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 HAUS6Q7Z4H7 955 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 XXYLT1Q8NBI6 393 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 GMCL1P1Q8NEA9 526 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 TLCD1Q96CP7 247 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 MYCBPQ99417 103 aaPredicted RBP13.03□□□□□ -0.32
CLIP3-201ENST00000360535 NCAPGQ9BPX3 1015 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 ACTR5Q9H9F9 607 aaPredicted RBP13.03□□□□□ -0.32
CLIP3-201ENST00000360535 DMAC2Q9NW81 257 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 USTQ9Y2C2 406 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 STK24Q9Y6E0 443 aa13.03□□□□□ -0.32
CLIP3-201ENST00000360535 CCT8L1PA6NM43 557 aa13.02□□□□□ -0.32
CLIP3-201ENST00000360535 RASSF9O75901 435 aa13.02□□□□□ -0.32
CLIP3-201ENST00000360535 EIF2AK2P19525 551 aaKnown RBP13.02□□□□□ -0.32
CLIP3-201ENST00000360535 COILP38432 576 aaPredicted RBP13.02□□□□□ -0.32
CLIP3-201ENST00000360535 KIF22Q14807 665 aa13.02□□□□□ -0.32
CLIP3-201ENST00000360535 INTS8Q75QN2 995 aaKnown RBP13.02□□□□□ -0.32
CLIP3-201ENST00000360535 LDHDQ86WU2 507 aa13.02□□□□□ -0.32
CLIP3-201ENST00000360535 LMO3Q8TAP4 145 aa13.02□□□□□ -0.32
CLIP3-201ENST00000360535 SEMA4DQ92854 862 aa13.02□□□□□ -0.32
CLIP3-201ENST00000360535 SLC5A5Q92911 643 aa13.02□□□□□ -0.32
CLIP3-201ENST00000360535 TMEM117Q9H0C3 514 aa13.02□□□□□ -0.32
CLIP3-201ENST00000360535 ABCF3Q9NUQ8 709 aa13.02□□□□□ -0.32
CLIP3-201ENST00000360535 FGFR1OP2Q9NVK5 253 aa13.02□□□□□ -0.32
CLIP3-201ENST00000360535 STK38LQ9Y2H1 464 aa13.02□□□□□ -0.32
CLIP3-201ENST00000360535 GSTTP1A0A1W2PQM5 241 aa13.02□□□□□ -0.33
CLIP3-201ENST00000360535 TCP11X1B4DZS4 312 aa13.02□□□□□ -0.33
CLIP3-201ENST00000360535 RTN2O75298 545 aa13.02□□□□□ -0.33
CLIP3-201ENST00000360535 ALAS1P13196 640 aa13.02□□□□□ -0.33
CLIP3-201ENST00000360535 ITGB5P18084 799 aa13.02□□□□□ -0.33
CLIP3-201ENST00000360535 KRT17Q04695 432 aa13.02□□□□□ -0.33
CLIP3-201ENST00000360535 PPP2R5CQ13362 524 aa13.02□□□□□ -0.33
CLIP3-201ENST00000360535 KYNUQ16719 465 aa13.02□□□□□ -0.33
CLIP3-201ENST00000360535 DACT2Q5SW24 774 aa13.02□□□□□ -0.33
CLIP3-201ENST00000360535 SLC13A5Q86YT5 568 aaPredicted RBP13.02□□□□□ -0.33
CLIP3-201ENST00000360535 EPS8L1Q8TE68 723 aa13.02□□□□□ -0.33
CLIP3-201ENST00000360535 SEC14L1Q92503 715 aa13.02□□□□□ -0.33
CLIP3-201ENST00000360535 SYT11Q9BT88 431 aa13.02□□□□□ -0.33
CLIP3-201ENST00000360535 KCNH7Q9NS40 1196 aa13.02□□□□□ -0.33
CLIP3-201ENST00000360535 ANAPC7Q9UJX3 599 aa13.02□□□□□ -0.33
CLIP3-201ENST00000360535 ZHX2Q9Y6X8 837 aa13.02□□□□□ -0.33
CLIP3-201ENST00000360535 RIPK2O43353 540 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 RAD17O75943 681 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 ECEL1O95672 775 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 ADRB2P07550 413 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 CHKAP35790 457 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 RASA3Q14644 834 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 C6orf118Q5T5N4 469 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 NUGGCQ68CJ6 796 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 KIF2BQ8N4N8 673 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 CPA5Q8WXQ8 436 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 CCT6BQ92526 530 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 ARHGEF2Q92974 986 aaKnown RBP13.01□□□□□ -0.33
CLIP3-201ENST00000360535 KREMEN1Q96MU8 473 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 ACCSQ96QU6 501 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 ADAM7Q9H2U9 754 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 CHST7Q9NS84 486 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 SEL1LQ9UBV2 794 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 CCPG1Q9ULG6 757 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 DIS3Q9Y2L1 958 aaKnown RBP13.01□□□□□ -0.33
CLIP3-201ENST00000360535 NFIBO00712 420 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 CHRNB2P17787 502 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 XKR9Q5GH70 373 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 PASD1Q8IV76 773 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 CCDC63Q8NA47 563 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 CDC42EP4Q9H3Q1 356 aaKnown RBP13.01□□□□□ -0.33
CLIP3-201ENST00000360535 TTC7AQ9ULT0 858 aaPredicted RBP13.01□□□□□ -0.33
CLIP3-201ENST00000360535 PASKQ96RG2 1323 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 MIF4GDA9UHW6 222 aaKnown RBP13.01□□□□□ -0.33
CLIP3-201ENST00000360535 SLC26A4O43511 780 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 PPP2R5EQ16537 467 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 SWT1Q5T5J6 900 aaKnown RBP13.01□□□□□ -0.33
CLIP3-201ENST00000360535 SGSM3Q96HU1 749 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 PAGR1Q9BTK6 254 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 TXLNGYQ9BZA5 131 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 KLHL11Q9NVR0 708 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 TMOD2Q9NZR1 351 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 ODF2LQ9ULJ1 636 aa13.01□□□□□ -0.33
CLIP3-201ENST00000360535 MRPL11Q9Y3B7 192 aaKnown RBP13.01□□□□□ -0.33
CLIP3-201ENST00000360535 PODXLO00592 558 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 ADCY8P40145 1251 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 RWDD2BP57060 319 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 ADCY2Q08462 1091 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 AUHQ13825 339 aaKnown RBP13□□□□□ -0.33
CLIP3-201ENST00000360535 CYP4F22Q6NT55 531 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 TAS1R2Q8TE23 839 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 ATXN2LQ8WWM7 1075 aaKnown RBP13□□□□□ -0.33
CLIP3-201ENST00000360535 IDI2Q9BXS1 227 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 ZBTB12Q9Y330 459 aaPredicted RBP13□□□□□ -0.33
CLIP3-201ENST00000360535 ATXN2Q99700 1313 aaKnown RBP13□□□□□ -0.33
CLIP3-201ENST00000360535 BHMG1C9JSJ3 638 aaPredicted RBP13□□□□□ -0.33
CLIP3-201ENST00000360535 GH1P01241 217 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 MAPK4P31152 587 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 NF2P35240 595 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 MMP13P45452 471 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 PEX5P50542 639 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 PDE6CP51160 858 aa13□□□□□ -0.33
CLIP3-201ENST00000360535 STRIP1Q5VSL9 837 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms