RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 NT5C3AQ9H0P0 336 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 PARP2Q9UGN5 583 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 CLIC4Q9Y696 253 aa20.27■□□□□ 0.84
CLN3-202ENST00000355477 MYH15Q9Y2K3 1946 aa20.26■□□□□ 0.83
CLN3-202ENST00000355477 CCDC169A6NNP5 214 aa20.26■□□□□ 0.83
CLN3-202ENST00000355477 K7ERI5 159 aa20.26■□□□□ 0.83
CLN3-202ENST00000355477 CLASP2O75122 1294 aaKnown RBP20.26■□□□□ 0.83
CLN3-202ENST00000355477 SSBP05455 408 aaKnown RBP eCLIP20.26■□□□□ 0.83
CLN3-202ENST00000355477 CTSAP10619 480 aa20.26■□□□□ 0.83
CLN3-202ENST00000355477 SLC12A3P55017 1021 aa20.26■□□□□ 0.83
CLN3-202ENST00000355477 RAD51AP2Q09MP3 1159 aa20.26■□□□□ 0.83
CLN3-202ENST00000355477 TMEM132AQ24JP5 1023 aa20.26■□□□□ 0.83
CLN3-202ENST00000355477 GJD3Q8N144 294 aa20.26■□□□□ 0.83
CLN3-202ENST00000355477 KCTD17Q8N5Z5 321 aa20.26■□□□□ 0.83
CLN3-202ENST00000355477 AK8Q96MA6 479 aa20.26■□□□□ 0.83
CLN3-202ENST00000355477 CXCL16Q9H2A7 254 aa20.26■□□□□ 0.83
CLN3-202ENST00000355477 MARCH5Q9NX47 278 aa20.26■□□□□ 0.83
CLN3-202ENST00000355477 SNTG2Q9NY99 539 aa20.26■□□□□ 0.83
CLN3-202ENST00000355477 PRG3Q9Y2Y8 225 aaPredicted RBP20.26■□□□□ 0.83
CLN3-202ENST00000355477 F8W810 466 aa20.25■□□□□ 0.83
CLN3-202ENST00000355477 BMP15O95972 392 aa20.25■□□□□ 0.83
CLN3-202ENST00000355477 PLA2G4BP0C869 781 aa20.25■□□□□ 0.83
CLN3-202ENST00000355477 GUCY2CP25092 1073 aa20.25■□□□□ 0.83
CLN3-202ENST00000355477 CA8P35219 290 aa20.25■□□□□ 0.83
CLN3-202ENST00000355477 OR1G1P47890 313 aa20.25■□□□□ 0.83
CLN3-202ENST00000355477 ZP2Q05996 745 aa20.25■□□□□ 0.83
CLN3-202ENST00000355477 PTPAQ15257 358 aa20.25■□□□□ 0.83
CLN3-202ENST00000355477 ARSHQ5FYA8 562 aa20.25■□□□□ 0.83
CLN3-202ENST00000355477 TAS1R3Q7RTX0 852 aa20.25■□□□□ 0.83
CLN3-202ENST00000355477 CDK5RAP3Q96JB5 506 aa20.25■□□□□ 0.83
CLN3-202ENST00000355477 DRC1Q96MC2 740 aa20.25■□□□□ 0.83
CLN3-202ENST00000355477 PRKAG3Q9UGI9 489 aa20.25■□□□□ 0.83
CLN3-202ENST00000355477 MTMR6Q9Y217 621 aa20.25■□□□□ 0.83
CLN3-202ENST00000355477 IRAK3Q9Y616 596 aa20.25■□□□□ 0.83
CLN3-202ENST00000355477 CITO14578 2027 aa20.24■□□□□ 0.83
CLN3-202ENST00000355477 NPHP3-ACAD11A0A0J9YXS1 232 aa20.24■□□□□ 0.83
CLN3-202ENST00000355477 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.24■□□□□ 0.83
CLN3-202ENST00000355477 FSD2A1L4K1 749 aa20.24■□□□□ 0.83
CLN3-202ENST00000355477 C19orf67A6NJJ6 358 aa20.24■□□□□ 0.83
CLN3-202ENST00000355477 SSTR3P32745 418 aaPredicted RBP20.24■□□□□ 0.83
CLN3-202ENST00000355477 UBA7P41226 1012 aa20.24■□□□□ 0.83
CLN3-202ENST00000355477 DMP1Q13316 513 aaPredicted RBP20.24■□□□□ 0.83
CLN3-202ENST00000355477 TAS1R1Q7RTX1 841 aa20.24■□□□□ 0.83
CLN3-202ENST00000355477 ADHFE1Q8IWW8 467 aa20.24■□□□□ 0.83
CLN3-202ENST00000355477 SNX21Q969T3 373 aa20.24■□□□□ 0.83
CLN3-202ENST00000355477 EPHX3Q9H6B9 360 aa20.24■□□□□ 0.83
CLN3-202ENST00000355477 KMT5AQ9NQR1 393 aa20.24■□□□□ 0.83
CLN3-202ENST00000355477 ARHGAP28Q9P2N2 729 aa20.24■□□□□ 0.83
CLN3-202ENST00000355477 USP15Q9Y4E8 981 aaPredicted RBP20.24■□□□□ 0.83
CLN3-202ENST00000355477 SLC16A4O15374 487 aa20.23■□□□□ 0.83
CLN3-202ENST00000355477 EFEMP2O95967 443 aa20.23■□□□□ 0.83
CLN3-202ENST00000355477 LONP1P36776 959 aaKnown RBP20.23■□□□□ 0.83
CLN3-202ENST00000355477 BMS1Q14692 1282 aaKnown RBP20.23■□□□□ 0.83
CLN3-202ENST00000355477 PTPN14Q15678 1187 aa20.23■□□□□ 0.83
CLN3-202ENST00000355477 ATF7IP2Q5U623 682 aa20.23■□□□□ 0.83
CLN3-202ENST00000355477 ANKRD54Q6NXT1 300 aa20.23■□□□□ 0.83
CLN3-202ENST00000355477 SYCE2Q6PIF2 218 aa20.23■□□□□ 0.83
CLN3-202ENST00000355477 RABGGTAQ92696 567 aa20.23■□□□□ 0.83
CLN3-202ENST00000355477 ACO2Q99798 780 aaKnown RBP20.23■□□□□ 0.83
CLN3-202ENST00000355477 ADPGKQ9BRR6 497 aa20.23■□□□□ 0.83
CLN3-202ENST00000355477 NTPCRQ9BSD7 190 aaKnown RBP20.23■□□□□ 0.83
CLN3-202ENST00000355477 TIPINQ9BVW5 301 aa20.23■□□□□ 0.83
CLN3-202ENST00000355477 S1PR5Q9H228 398 aa20.23■□□□□ 0.83
CLN3-202ENST00000355477 TMEM134Q9H6X4 195 aa20.23■□□□□ 0.83
CLN3-202ENST00000355477 C17orf75Q9HAS0 396 aa20.23■□□□□ 0.83
CLN3-202ENST00000355477 BLOC1S4Q9NUP1 217 aa20.23■□□□□ 0.83
CLN3-202ENST00000355477 CACNG4Q9UBN1 327 aa20.23■□□□□ 0.83
CLN3-202ENST00000355477 HCFC2Q9Y5Z7 792 aa20.23■□□□□ 0.83
CLN3-202ENST00000355477 ZMYM2Q9UBW7 1377 aa20.22■□□□□ 0.83
CLN3-202ENST00000355477 PLXNA3P51805 1871 aa20.22■□□□□ 0.83
CLN3-202ENST00000355477 PTGESO14684 152 aa20.22■□□□□ 0.83
CLN3-202ENST00000355477 SLC26A4O43511 780 aa20.22■□□□□ 0.83
CLN3-202ENST00000355477 LILRB3O75022 631 aa20.22■□□□□ 0.83
CLN3-202ENST00000355477 RECQL4O94761 1208 aa20.22■□□□□ 0.83
CLN3-202ENST00000355477 MARCKSP29966 332 aaPredicted RBP20.22■□□□□ 0.83
CLN3-202ENST00000355477 CACNB1Q02641 598 aaPredicted RBP20.22■□□□□ 0.83
CLN3-202ENST00000355477 GRIK3Q13003 919 aa20.22■□□□□ 0.83
CLN3-202ENST00000355477 KARSQ15046 597 aaKnown RBP20.22■□□□□ 0.83
CLN3-202ENST00000355477 SPECC1Q5M775 1068 aa20.22■□□□□ 0.83
CLN3-202ENST00000355477 USP49Q70CQ1 688 aa20.22■□□□□ 0.83
CLN3-202ENST00000355477 CALML4Q96GE6 196 aa20.22■□□□□ 0.83
CLN3-202ENST00000355477 APOL5Q9BWW9 433 aa20.22■□□□□ 0.83
CLN3-202ENST00000355477 TNFSF13BQ9Y275 285 aa20.22■□□□□ 0.83
CLN3-202ENST00000355477 GDAQ9Y2T3 454 aa20.22■□□□□ 0.83
CLN3-202ENST00000355477 PHLPP2Q6ZVD8 1323 aa20.22■□□□□ 0.83
CLN3-202ENST00000355477 STX6O43752 255 aa20.21■□□□□ 0.83
CLN3-202ENST00000355477 PLS3P13797 630 aa20.21■□□□□ 0.83
CLN3-202ENST00000355477 PLCG1P19174 1290 aa20.21■□□□□ 0.83
CLN3-202ENST00000355477 CEBPZQ03701 1054 aaKnown RBP20.21■□□□□ 0.83
CLN3-202ENST00000355477 GIT2Q14161 759 aa20.21■□□□□ 0.83
CLN3-202ENST00000355477 DHX8Q14562 1220 aaKnown RBP20.21■□□□□ 0.83
CLN3-202ENST00000355477 DCAF4L1Q3SXM0 396 aa20.21■□□□□ 0.83
CLN3-202ENST00000355477 SLC22A17Q8WUG5 538 aa20.21■□□□□ 0.83
CLN3-202ENST00000355477 SUSD6Q92537 303 aa20.21■□□□□ 0.83
CLN3-202ENST00000355477 EPSTI1Q96J88 318 aa20.21■□□□□ 0.83
CLN3-202ENST00000355477 RPS6KC1Q96S38 1066 aa20.21■□□□□ 0.83
CLN3-202ENST00000355477 PAAF1Q9BRP4 392 aa20.21■□□□□ 0.83
CLN3-202ENST00000355477 TARS2Q9BW92 718 aaKnown RBP20.21■□□□□ 0.83
CLN3-202ENST00000355477 PTPRHQ9HD43 1115 aa20.21■□□□□ 0.83
CLN3-202ENST00000355477 KCND2Q9NZV8 630 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms