RNA–Protein interactions for RNA: ENST00000350034.4

TRIM55-203, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,177 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-203ENST00000350034 CCDC113Q9H0I3 377 aa7.5□□□□□ -1.21
TRIM55-203ENST00000350034 SMARCAD1Q9H4L7 1026 aa7.5□□□□□ -1.21
TRIM55-203ENST00000350034 AZI2Q9H6S1 392 aa7.5□□□□□ -1.21
TRIM55-203ENST00000350034 VTA1Q9NP79 307 aa7.5□□□□□ -1.21
TRIM55-203ENST00000350034 PDGFCQ9NRA1 345 aa7.5□□□□□ -1.21
TRIM55-203ENST00000350034 HDAC6Q9UBN7 1215 aa7.5□□□□□ -1.21
TRIM55-203ENST00000350034 SNX12Q9UMY4 172 aa7.5□□□□□ -1.21
TRIM55-203ENST00000350034 COL6A3P12111 3177 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 WDR81Q562E7 1941 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 GRID2IPA4D2P6 1211 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 LRRIQ4A6NIV6 560 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 K7ERI5 159 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 PDE2AO00408 941 aaPredicted RBP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 ABLIM1O14639 778 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 HNRNPDLO14979 420 aaKnown RBP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 HBP1O60381 514 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 MSCO60682 206 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 ZC3H11AO75152 810 aaKnown RBP eCLIP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 SNAI1O95863 264 aaPredicted RBP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 C4BPAP04003 597 aaKnown RBP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 EDN1P05305 212 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 H2AFZP0C0S5 128 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 HOXD8P13378 290 aaPredicted RBP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 TCP1P17987 556 aaKnown RBP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 ADORA2AP29274 412 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 LIG4P49917 911 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 EFNA5P52803 228 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 CKAP4Q07065 602 aaKnown RBP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 STRN3Q13033 797 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 LAMC2Q13753 1193 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 GRB14Q14449 540 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 MXD4Q14582 209 aaPredicted RBP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 TCEAL1Q15170 157 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 ENOX2Q16206 610 aaKnown RBP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 FAM110CQ1W6H9 321 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 ZACNQ401N2 412 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 TEX35Q5T0J7 233 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 TMEM63BQ5T3F8 832 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 SMYD5Q6GMV2 418 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 H2AFVQ71UI9 128 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 SLFN11Q7Z7L1 901 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 TRIM50Q86XT4 487 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 CREG2Q8IUH2 290 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 LINC01465Q8N7H1 131 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 C2orf69Q8N8R5 385 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 LRRC57Q8N9N7 239 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 TCP11Q8WWU5 503 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 PRPF31Q8WWY3 499 aaKnown RBP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 SHC3Q92529 594 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 ZNF516Q92618 1163 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 GLG1Q92896 1179 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 RPGRIP1Q96KN7 1286 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 KREMEN1Q96MU8 473 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 ALS2CR12Q96Q35 445 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 PARK7Q99497 189 aaKnown RBP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 JPH2Q9BR39 696 aaPredicted RBP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 FAM213AQ9BRX8 229 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 TARS2Q9BW92 718 aaKnown RBP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 ANKZF1Q9H8Y5 726 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 ZNF408Q9H9D4 720 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 RRAGCQ9HB90 399 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 UBE2TQ9NPD8 197 aaPredicted RBP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 FAM53CQ9NYF3 392 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 PUF60Q9UHX1 559 aaKnown RBP7.49□□□□□ -1.21
TRIM55-203ENST00000350034 TSKSQ9UJT2 592 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 RAB21Q9UL25 225 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 MYH11P35749 1972 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 NCANO14594 1321 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 CNTNAP2Q9UHC6 1331 aa7.49□□□□□ -1.21
TRIM55-203ENST00000350034 SLC15A5A6NIM6 579 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 NOP56O00567 594 aaKnown RBP7.48□□□□□ -1.21
TRIM55-203ENST00000350034 BUB1O43683 1085 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 FAM189A1O60320 539 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 SRGAP2O75044 1071 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 PALMO75781 387 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 ZRANB2O95218 330 aaKnown RBP eCLIP7.48□□□□□ -1.21
TRIM55-203ENST00000350034 CELF2O95319 508 aaKnown RBP7.48□□□□□ -1.21
TRIM55-203ENST00000350034 ITGBL1O95965 494 aaPredicted RBP7.48□□□□□ -1.21
TRIM55-203ENST00000350034 LDHAP00338 332 aaKnown RBP7.48□□□□□ -1.21
TRIM55-203ENST00000350034 GH1P01241 217 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 TUBBP07437 444 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 TMEM253P0C7T8 217 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 CHRNB2P17787 502 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 PROZP22891 400 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 CLCN6P51797 869 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 GALCP54803 685 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 MFAP3P55082 362 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 WNT7BP56706 349 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 NLRP11P59045 1033 aaKnown RBP7.48□□□□□ -1.21
TRIM55-203ENST00000350034 GCNT1Q02742 428 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 MAP2K1Q02750 393 aaPredicted RBP7.48□□□□□ -1.21
TRIM55-203ENST00000350034 POU5F1BQ06416 359 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 LAMTOR4Q0VGL1 99 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 GRM1Q13255 1194 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 PRPF4BQ13523 1007 aaKnown RBP7.48□□□□□ -1.21
TRIM55-203ENST00000350034 IRF5Q13568 498 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 ARHGAP44Q17R89 818 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 ZNF484Q5JVG2 852 aa7.48□□□□□ -1.21
TRIM55-203ENST00000350034 MEI1Q5TIA1 1274 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms