RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 ZNF268Q14587 947 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 CUL5Q93034 780 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 NAF1Q96HR8 494 aaKnown RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PSMD14O00487 310 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 CYP4A11Q02928 519 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 TAF11Q15544 211 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PPP1R26Q5T8A7 1209 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 CYP4A22Q5TCH4 519 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 MAF1Q9H063 256 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 ETAA1Q9NY74 926 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 GINS2Q9Y248 185 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 FAM169AQ9Y6X4 670 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 H7C1W4 665 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 RASA2Q15283 850 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 USPL1Q5W0Q7 1092 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 SCYL2Q6P3W7 929 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PATJQ8NI35 1801 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 GTF3C2Q8WUA4 911 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PAWRQ96IZ0 340 aaKnown RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 CGREF1Q99674 301 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 TEX13BQ9BXU2 312 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 DCLRE1BQ9H816 532 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 RWDD3Q9Y3V2 267 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 DOCK7Q96N67 2140 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 A8MV72 311 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 SEPT3Q9UH03 358 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 IFIT1P09914 478 aaKnown RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PSMC5P62195 406 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 DPY19L2Q6NUT2 758 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 OLFML1Q6UWY5 402 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 MAP4K1Q92918 833 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 NUP85Q9BW27 656 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 CAPS2Q9BXY5 557 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 KRT82Q9NSB4 513 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 EPS8Q12929 822 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 COL19A1Q14993 1142 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 AMHR2Q16671 573 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 TSNARE1Q96NA8 513 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 IRS2Q9Y4H2 1338 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 CAPN1P07384 714 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 TCN1P20061 433 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 HNRNPH3P31942 346 aaKnown RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 ELF1P32519 619 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 SNX31Q8N9S9 440 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 VRTNQ9H8Y1 702 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PIDD1Q9HB75 910 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 SAR1AQ9NR31 198 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 ACAD8Q9UKU7 415 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 ARHGEF17Q96PE2 2063 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PODXLO00592 558 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 GNAT2P19087 354 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 SERPINB3P29508 390 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 GUCY1A2P33402 732 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 GNAQP50148 359 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 OCRLQ01968 901 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 ALX1Q15699 326 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 CPA4Q9UI42 421 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PNMA3Q9UL41 463 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 FRMPD2Q68DX3 1309 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-201ENST00000341594 KRT77Q7Z794 578 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 OSBPL10Q9BXB5 764 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 PARVBQ9HBI1 364 aa3.77□□□□□ -1.81
SYNE1-201ENST00000341594 GOLGA8BA8MQT2 603 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 ZC3H12AQ5D1E8 599 aaKnown RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 EPAS1Q99814 870 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 BCAS3Q9H6U6 928 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 LRRC24Q50LG9 513 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 ZNF366Q8N895 744 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CATSPER2Q96P56 530 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 IKZF4Q9H2S9 585 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CCDC163A0A0D9SF12 145 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 BTNL10A8MVZ5 291 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 MYL3P08590 195 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 KCNB1Q14721 858 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 BEND6Q5SZJ8 279 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 NELFBQ8WX92 580 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 PCDHB13Q9Y5F0 798 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 ADAMTS7Q9UKP4 1686 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 TTI1O43156 1089 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 PROSER3Q2NL68 480 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 ANKRD23Q86SG2 305 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 DIS3LQ8TF46 1054 aaKnown RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CCT6BQ92526 530 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 SLC39A14Q15043 492 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CLEC4GQ6UXB4 293 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CEP95Q96GE4 821 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 TMEM237Q96Q45 408 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 PRR23AA6NEV1 266 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CALM1P0DP23 149 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CALM2P0DP24 149 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CALM3P0DP25 149 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 RBM20Q5T481 1227 aaKnown RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 C1orf167Q5SNV9 1468 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 H0YJX3 145 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 KRT10P13645 584 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 TNFAIP3P21580 790 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 ARMCX5Q6P1M9 558 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 USP17L6PQ6QN14 398 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 POF1BQ8WVV4 589 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms