RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ATP6V0A1Q93050 837 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 CAVIN3Q969G5 261 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 LCMT1Q9UIC8 334 aa11.15□□□□□ -0.62
LIMA1-201ENST00000341247 LAMA2P24043 3122 aaKnown RBP11.15□□□□□ -0.63
LIMA1-201ENST00000341247 FZD9O00144 591 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 ZBTB48P10074 688 aaPredicted RBP11.14□□□□□ -0.63
LIMA1-201ENST00000341247 CHRNB2P17787 502 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 TNNI1P19237 187 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 POLGP54098 1239 aaPredicted RBP11.14□□□□□ -0.63
LIMA1-201ENST00000341247 GNGT1P63211 74 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 PPATQ06203 517 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 PDCLQ13371 301 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 ZNF653Q96CK0 615 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 ANKEF1Q9NU02 776 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 INTUQ9ULD6 942 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 PSAPP07602 524 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 COMTP21964 271 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 RPS12P25398 132 aaKnown RBP11.14□□□□□ -0.63
LIMA1-201ENST00000341247 WNT7BP56706 349 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 BIRC3Q13489 604 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 DAB2IPQ5VWQ8 1189 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 MAP4K3Q8IVH8 894 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 TEX2Q8IWB9 1127 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 REPS2Q8NFH8 660 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 NT5C1BQ96P26 610 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 PAGR1Q9BTK6 254 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 TEX13BQ9BXU2 312 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 ACAD9Q9H845 621 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 CYP26B1Q9NR63 512 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 SPOPO43791 374 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 ANXA13P27216 316 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 LIG4P49917 911 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 GPC5P78333 572 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 PIK3R5Q8WYR1 880 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 RAB20Q9NX57 234 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 NCANO14594 1321 aa11.14□□□□□ -0.63
LIMA1-201ENST00000341247 MAPTP10636 758 aaKnown RBP11.13□□□□□ -0.63
LIMA1-201ENST00000341247 MFAP3P55082 362 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 PPFIA1Q13136 1202 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 ZBTB41Q5SVQ8 909 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 TREML2Q5T2D2 321 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 FBXL13Q8NEE6 735 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 GPRASP2Q96D09 838 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 IFT74Q96LB3 600 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 IWS1Q96ST2 819 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 NUP85Q9BW27 656 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 ISCUQ9H1K1 167 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 DOCK1Q14185 1865 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 TCRBV7S2A1N4TA0A589 114 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 SPDYE16A6NNV3 312 aaPredicted RBP11.13□□□□□ -0.63
LIMA1-201ENST00000341247 CYP11B1P15538 503 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 MARK3P27448 753 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 ECHS1P30084 290 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 FMO1Q01740 532 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 MYBPC2Q14324 1141 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 SCARA3Q6AZY7 606 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 TAS1R3Q7RTX0 852 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 PASD1Q8IV76 773 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 UHMK1Q8TAS1 419 aaKnown RBP11.13□□□□□ -0.63
LIMA1-201ENST00000341247 C18orf8Q96DM3 657 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 FAM212AQ96EL1 285 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 CAPS2Q9BXY5 557 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 TRIM7Q9C029 511 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 PTPN22Q9Y2R2 807 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 SNX24Q9Y343 169 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 PAPPA2Q9BXP8 1791 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 HSD17B3P37058 310 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 PDE6CP51160 858 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 CYP24A1Q07973 514 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 ALS2CLQ60I27 953 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 CCDC26Q8TAB7 109 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 HELQQ8TDG4 1101 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 CPA5Q8WXQ8 436 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 KIFAP3Q92845 792 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 KLRG1Q96E93 195 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 ATP6V0A4Q9HBG4 840 aa11.13□□□□□ -0.63
LIMA1-201ENST00000341247 GOLGA8KD6RF30 607 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 TNFRSF8P28908 595 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 CTNNA1P35221 906 aaKnown RBP11.12□□□□□ -0.63
LIMA1-201ENST00000341247 NF2P35240 595 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 NLRP11P59045 1033 aaKnown RBP11.12□□□□□ -0.63
LIMA1-201ENST00000341247 GHRHRQ02643 423 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 CATSPERGQ6ZRH7 1159 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 NCAPG2Q86XI2 1143 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 C12orf56Q8IXR9 622 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 FAM71AQ8IYT1 594 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 IQCKQ8N0W5 287 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 GPD1LQ8N335 351 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 FNBP1Q96RU3 617 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 FAM107BQ9H098 131 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 TMEM8AQ9HCN3 771 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 NOCTQ9UK39 431 aaKnown RBP11.12□□□□□ -0.63
LIMA1-201ENST00000341247 ATP8A1Q9Y2Q0 1164 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 UTP11Q9Y3A2 253 aaKnown RBP11.12□□□□□ -0.63
LIMA1-201ENST00000341247 SMIM23A6NLE4 172 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 RTN2O75298 545 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 STBD1O95210 358 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 GJC1P36383 396 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 KCNJ1P48048 391 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 GUCY1A3Q02108 690 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms