RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PGBD4Q96DM1 585 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 TGS1Q96RS0 853 aaKnown RBP13.36□□□□□ -0.27
SDC3-201ENST00000336798 RBAKQ9NYW8 714 aaPredicted RBP13.36□□□□□ -0.27
SDC3-201ENST00000336798 RNF14Q9UBS8 474 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 RCOR1Q9UKL0 485 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 VCAM1P19320 739 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 ALDH18A1P54886 795 aaKnown RBP13.36□□□□□ -0.27
SDC3-201ENST00000336798 BCAR1P56945 870 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 SESN2P58004 480 aaPredicted RBP13.36□□□□□ -0.27
SDC3-201ENST00000336798 DMC1Q14565 340 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 ARHGEF25Q86VW2 580 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 SPATA2LQ8IUW3 424 aaPredicted RBP13.36□□□□□ -0.27
SDC3-201ENST00000336798 SYNGAP1Q96PV0 1343 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 MRPL4Q9BYD3 311 aaKnown RBP13.36□□□□□ -0.27
SDC3-201ENST00000336798 DDX47Q9H0S4 455 aaKnown RBP13.36□□□□□ -0.27
SDC3-201ENST00000336798 ABHD10Q9NUJ1 306 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 PCSK7Q16549 785 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 PKN3Q6P5Z2 889 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 OR6J1Q8NGC5 347 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 NCAPHQ15003 741 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 MFN1Q8IWA4 741 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 RALAP11233 206 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 NLRP11P59045 1033 aaKnown RBP13.36□□□□□ -0.27
SDC3-201ENST00000336798 AP3B2Q13367 1082 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 VEPH1Q14D04 833 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 CLMNQ96JQ2 1002 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 RPAP3Q9H6T3 665 aaPredicted RBP13.36□□□□□ -0.27
SDC3-201ENST00000336798 ZSCAN32Q9NX65 697 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 HAUS5O94927 633 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 FGFR4P22455 802 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 TYK2P29597 1187 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 AKT1P31749 480 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 PCYT1AP49585 367 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 ACTN3Q08043 901 aaPredicted RBP13.35□□□□□ -0.27
SDC3-201ENST00000336798 KLHL38Q2WGJ6 581 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 TRIM54Q9BYV2 358 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 EPC1Q9H2F5 836 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 ACTR5Q9H9F9 607 aaPredicted RBP13.35□□□□□ -0.27
SDC3-201ENST00000336798 TMEM161AQ9NX61 479 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 DONSONQ9NYP3 566 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 PCDHGB4Q9UN71 923 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 KRT72Q14CN4 511 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 RINLQ6ZS11 566 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.35□□□□□ -0.27
SDC3-201ENST00000336798 ECT2Q9H8V3 914 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 IP6K2Q9UHH9 426 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 ENO4A6NNW6 628 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 GFAPP14136 432 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 TXNRD1Q16881 649 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 ANKS3Q6ZW76 656 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 EXOC4Q96A65 974 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 ADNPQ9H2P0 1102 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 TRAF3IP3Q9Y228 551 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 TTC13Q8NBP0 860 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 BHMTQ93088 406 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 GOLPH3LQ9H4A5 285 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 MAD2L2Q9UI95 211 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 HEG1Q9ULI3 1381 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 ARHGEF9O43307 516 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 DDHD2O94830 711 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 STRBPQ96SI9 672 aaKnown RBP13.35□□□□□ -0.27
SDC3-201ENST00000336798 PLXNC1O60486 1568 aa13.35□□□□□ -0.27
SDC3-201ENST00000336798 KCNN4O15554 427 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 TLR2O60603 784 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 PDGFRBP09619 1106 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 QARSP47897 775 aaKnown RBP13.34□□□□□ -0.27
SDC3-201ENST00000336798 KNOP1Q1ED39 458 aaKnown RBP13.34□□□□□ -0.27
SDC3-201ENST00000336798 RCSD1Q6JBY9 416 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 RNF149Q8NC42 400 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 SEPT5Q99719 369 aaPredicted RBP13.34□□□□□ -0.27
SDC3-201ENST00000336798 PLEKHA5Q9HAU0 1116 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 MYO1GB0I1T2 1018 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 APOL1O14791 398 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 TDP2O95551 362 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 ZFXP17010 805 aaPredicted RBP13.34□□□□□ -0.27
SDC3-201ENST00000336798 MAP4P27816 1152 aaKnown RBP13.34□□□□□ -0.27
SDC3-201ENST00000336798 ARFIP2P53365 341 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 RAD18Q9NS91 495 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 EMSYQ7Z589 1322 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 SUPT3HO75486 399 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 RARBP10826 455 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 HOXD10P28358 340 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 FBXO38Q6PIJ6 1188 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 TBC1D22BQ9NU19 505 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 CYP2E1P05181 493 aaPredicted RBP13.34□□□□□ -0.27
SDC3-201ENST00000336798 ARSEP51690 589 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 HMGCS2P54868 508 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 PFKFB3Q16875 520 aaPredicted RBP13.34□□□□□ -0.27
SDC3-201ENST00000336798 OR9Q1Q8NGQ5 310 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 SLC30A5Q8TAD4 765 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 MTBPQ96DY7 904 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 PLEKHF1Q96S99 279 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 FBXO40Q9UH90 709 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 ARHGAP26Q9UNA1 814 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 PRR23AA6NEV1 266 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 POLRMTO00411 1230 aaKnown RBP13.34□□□□□ -0.27
SDC3-201ENST00000336798 TADA2AO75478 443 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 CSE1LP55060 971 aaKnown RBP13.34□□□□□ -0.27
SDC3-201ENST00000336798 RAD51Q06609 339 aa13.34□□□□□ -0.27
SDC3-201ENST00000336798 CYTH1Q15438 398 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms