RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TMEM139Q8IV31 216 aa16.23■□□□□ 0.19
CCDC88C-202ENST00000334448 BRSK2Q8IWQ3 736 aa16.23■□□□□ 0.19
CCDC88C-202ENST00000334448 ARRDC4Q8NCT1 418 aa16.23■□□□□ 0.19
CCDC88C-202ENST00000334448 SAAL1Q96ER3 474 aa16.23■□□□□ 0.19
CCDC88C-202ENST00000334448 NAA15Q9BXJ9 866 aaKnown RBP16.23■□□□□ 0.19
CCDC88C-202ENST00000334448 FAM49AQ9H0Q0 323 aaPredicted RBP16.23■□□□□ 0.19
CCDC88C-202ENST00000334448 TSKSQ9UJT2 592 aa16.23■□□□□ 0.19
CCDC88C-202ENST00000334448 PHF24Q9UPV7 400 aa16.23■□□□□ 0.19
CCDC88C-202ENST00000334448 COQ4Q9Y3A0 265 aa16.23■□□□□ 0.19
CCDC88C-202ENST00000334448 A0A1B0GUA9 196 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 B4GALT5O43286 388 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 NRDCO43847 1150 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 CAND2O75155 1236 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 NOL4O94818 638 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 TRIM49P0CI25 452 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 TRIM49CP0CI26 452 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 TRIM21P19474 475 aaKnown RBP16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 CASP14P31944 242 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 CRYBB1P53674 252 aaPredicted RBP16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 LRMPQ12912 555 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 EXOC3L4Q17RC7 722 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 TCERG1LQ5VWI1 586 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 GDF6Q6KF10 455 aaPredicted RBP16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 C15orf39Q6ZRI6 1047 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 DNAJB3Q8WWF6 145 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 ZBTB45Q96K62 511 aaPredicted RBP16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 FAM213AQ9BRX8 229 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 CDT1Q9H211 546 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 GANQ9H2C0 597 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 PDZD7Q9H5P4 517 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 TMEM8AQ9HCN3 771 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 CEP72Q9P209 647 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 ANKFY1Q9P2R3 1169 aa16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 CPSF3Q9UKF6 684 aaKnown RBP16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 LUC7L2Q9Y383 392 aaKnown RBP16.22■□□□□ 0.19
CCDC88C-202ENST00000334448 GOLGA8IPA6NC78 632 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 GOLGA8JA6NMD2 632 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 LRRIQ3A6PVS8 624 aaPredicted RBP16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 ARF4P18085 180 aaPredicted RBP16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 RFX1P22670 979 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 EIF4BP23588 611 aaKnown RBP16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 AXLP30530 894 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 KLK7P49862 253 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 ZNF200P98182 395 aaPredicted RBP16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 CDK17Q00537 523 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 MYL7Q01449 175 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 PPP3CAQ08209 521 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 SNX17Q15036 470 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 MEA1Q16626 185 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 KIZQ2M2Z5 673 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 ZNF568Q3ZCX4 644 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 CBWD6Q4V339 395 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 EPC2Q52LR7 807 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 CBWD3Q5JTY5 395 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 CBWD5Q5RIA9 395 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 EEF1DP3Q658K8 133 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 SMYD5Q6GMV2 418 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 RSPH3Q86UC2 560 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 CCDC155Q8N6L0 562 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 NEK11Q8NG66 645 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 BAP1Q92560 729 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 GLT1D1Q96MS3 346 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 NUCKS1Q9H1E3 243 aaKnown RBP16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 ABHD10Q9NUJ1 306 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 RBAKQ9NYW8 714 aaPredicted RBP16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 MYO6Q9UM54 1294 aa16.21■□□□□ 0.19
CCDC88C-202ENST00000334448 FRMPD3Q5JV73 1810 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 RNF225M0QZC1 329 aaPredicted RBP16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 DNM1LO00429 736 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 EPHB6O15197 1021 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 PON1P27169 355 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 KRT9P35527 623 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 MXI1P50539 228 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 AP3M2P53677 418 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 CHMP4BP1P59074 171 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 DLG4P78352 724 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 MRPS6P82932 125 aaKnown RBP16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 CETN1Q12798 172 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 PTK7Q13308 1070 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 ITGA7Q13683 1181 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 SURF1Q15526 300 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 DCAF4L1Q3SXM0 396 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 KRT39Q6A163 491 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 APBB1IPQ7Z5R6 666 aaPredicted RBP16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 RDH13Q8NBN7 331 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 OR8K1Q8NGG5 319 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 LMO3Q8TAP4 145 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 SH3TC2Q8TF17 1288 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 SYN2Q92777 582 aaPredicted RBP16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 SCLT1Q96NL6 688 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 LSM14BQ9BX40 385 aaKnown RBP16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 TMEM117Q9H0C3 514 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 MMRN2Q9H8L6 949 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 SIX2Q9NPC8 291 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 KCND1Q9NSA2 647 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 FAM207AQ9NSI2 230 aaPredicted RBP16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 AGPAT5Q9NUQ2 364 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 GCNT4Q9P109 453 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 OGDHLQ9ULD0 1010 aa16.2■□□□□ 0.18
CCDC88C-202ENST00000334448 EVPLQ92817 2033 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms