RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 NTSR2O95665 410 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 TRIM49P0CI25 452 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 TRIM49CP0CI26 452 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 COG2Q14746 738 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 CERKLQ49MI3 558 aaPredicted RBP14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 DSTYKQ6XUX3 929 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 RFX8Q6ZV50 586 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 C9orf72Q96LT7 481 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 MAGEB18Q96M61 343 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 REEP2Q9BRK0 252 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 GPR88Q9GZN0 384 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 PITPNM2Q9BZ72 1349 aa14.4□□□□□ -0.1
CCDC88C-201ENST00000331194 RREB1Q92766 1687 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 POLGP54098 1239 aaPredicted RBP14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 CALCOCO2Q13137 446 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 CBWD6Q4V339 395 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 CBWD3Q5JTY5 395 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 CBWD5Q5RIA9 395 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 HP1BP3Q5SSJ5 553 aaPredicted RBP14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 FOXR2Q6PJQ5 311 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 KIAA0825Q8IV33 1275 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 KIFAP3Q92845 792 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 FAM136AQ96C01 138 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 SERPINB12Q96P63 405 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 EYA3Q99504 573 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 MOV10L1Q9BXT6 1211 aaKnown RBP14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 ROPN1BQ9BZX4 212 aaPredicted RBP14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 ROPN1Q9HAT0 212 aaPredicted RBP14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 ASIC3Q9UHC3 531 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 GRID1Q9ULK0 1009 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 FTLP02792 175 aaPredicted RBP14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 CNGA1P29973 690 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 SETDB1Q15047 1291 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 PARP6Q2NL67 630 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 ZNF568Q3ZCX4 644 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 ERFEQ4G0M1 354 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 FBXO33Q7Z6M2 555 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 LRRC47Q8N1G4 583 aaKnown RBP14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 DRAXINQ8NBI3 349 aaPredicted RBP14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 RDH13Q8NBN7 331 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 GORASP1Q9BQQ3 440 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 NKIRAS1Q9NYS0 192 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 PHTF1Q9UMS5 762 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 FOXN3O00409 490 aaPredicted RBP14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 NVLO15381 856 aaKnown RBP14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 ATP9AO75110 1047 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 ALAS1P13196 640 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 LMNB1P20700 586 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 IL6STP40189 918 aaPredicted RBP14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 GIT2Q14161 759 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 PPP2R5EQ16537 467 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 SLC30A10Q6XR72 485 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 ZC3H18Q86VM9 953 aaKnown RBP14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 ZNF333Q96JL9 665 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 ZSWIM1Q9BR11 485 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 RUSC1Q9BVN2 902 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 UBE2OQ9C0C9 1292 aaKnown RBP14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 DHX36Q9H2U1 1008 aaKnown RBP14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 RGL1Q9NZL6 768 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 ASTN1O14525 1302 aa14.39□□□□□ -0.11
CCDC88C-201ENST00000331194 CLDN3O15551 220 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 THAP12O43422 761 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 KRT36O76013 467 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 GCNT3O95395 438 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 SKIV2L2P42285 1042 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 SLC12A3P55017 1021 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 KRT17Q04695 432 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 LBRQ14739 615 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 TMED2Q15363 201 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 TAF1BQ53T94 588 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 NSMFQ6X4W1 530 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 MIPEPQ99797 713 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 DNAJC18Q9H819 358 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 LMCD1Q9NZU5 365 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 PARP2Q9UGN5 583 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 ITGB4P16144 1822 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 PPP1R11O60927 126 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 HIBADHP31937 336 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 SLC16A2P36021 539 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 CYP4A11Q02928 519 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 SIX1Q15475 284 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 CCDC6Q16204 474 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 TSNAXIP1Q2TAA8 658 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 EPM2AIP1Q7L775 607 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 AGGF1Q8N302 714 aaeCLIP14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 RBBP8NLQ8NC74 664 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 CERKQ8TCT0 537 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 SCG3Q8WXD2 468 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 RUNDC3BQ96NL0 473 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 SYT11Q9BT88 431 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 TRAF3IP3Q9Y228 551 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 DIS3Q9Y2L1 958 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 ATAD5Q96QE3 1844 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 ANKRD36CQ5JPF3 1778 aa14.38□□□□□ -0.11
CCDC88C-201ENST00000331194 USP17L15C9J2P7 530 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 RASA4BC9J798 803 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 USP17L13C9JLJ4 530 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 USP17L11C9JVI0 530 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 USP17L18D6R9N7 530 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms