RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 GINM1Q9NU53 330 aa15.71■□□□□ 0.1
TCOF1-201ENST00000323668 F8VZ95 297 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 FECHP22830 423 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 COILP38432 576 aaPredicted RBP15.7■□□□□ 0.1
TCOF1-201ENST00000323668 FAM160B1Q5W0V3 765 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 TRIM72Q6ZMU5 477 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 SEPT12Q8IYM1 358 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 C9orf72Q96LT7 481 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 ZSWIM1Q9BR11 485 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 VCPKMTQ9H867 229 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 A0A0G2JND7 137 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 IQANK1A0A1B0GTG1 560 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 ATMINO43313 823 aaPredicted RBP15.7■□□□□ 0.1
TCOF1-201ENST00000323668 TNFRSF8P28908 595 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 YWHABP31946 246 aaKnown RBP15.7■□□□□ 0.1
TCOF1-201ENST00000323668 YARSP54577 528 aaKnown RBP15.7■□□□□ 0.1
TCOF1-201ENST00000323668 KCNMA1Q12791 1236 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 CXorf56Q9H5V9 222 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 RAVER2Q9HCJ3 691 aaKnown RBP15.7■□□□□ 0.1
TCOF1-201ENST00000323668 FGFR1OP2Q9NVK5 253 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 HESX1Q9UBX0 185 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 H0Y3Z8 333 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 SKIP12755 728 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 MKRN4PQ13434 485 aaPredicted RBP15.7■□□□□ 0.1
TCOF1-201ENST00000323668 EIF1ADQ8N9N8 165 aaKnown RBP15.7■□□□□ 0.1
TCOF1-201ENST00000323668 ANKRD36BP1Q96IX9 119 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 SPATA31A5Q5VU36 1347 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 SPATA31A7Q8IWB4 1347 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 TULP2O00295 520 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 SREBF1P36956 1147 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 SNRNP35Q16560 246 aaKnown RBP15.7■□□□□ 0.1
TCOF1-201ENST00000323668 LRRC34Q8IZ02 419 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 TTC13Q8NBP0 860 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 MMTAG2Q9BU76 263 aaKnown RBP15.7■□□□□ 0.1
TCOF1-201ENST00000323668 TRIM6Q9C030 488 aaPredicted RBP15.7■□□□□ 0.1
TCOF1-201ENST00000323668 ATP6V0A4Q9HBG4 840 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 FER1L4A9Z1Z3 1794 aa15.7■□□□□ 0.1
TCOF1-201ENST00000323668 INO80B-WBP1J3KQ70 363 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 MED7O43513 233 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 CALB1P05937 261 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 PSMA2P25787 234 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 GNA15P30679 374 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 COBLL1Q53SF7 1204 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 CYFIP1Q7L576 1253 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 C18orf8Q96DM3 657 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 RPS6KC1Q96S38 1066 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 INO80BQ9C086 356 aaPredicted RBP15.69■□□□□ 0.1
TCOF1-201ENST00000323668 ZWILCHQ9H900 591 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 MRC1P22897 1456 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 ZNF844Q08AG5 666 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 PPP2R5DQ14738 602 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 SPATA24Q86W54 205 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 GPD1LQ8N335 351 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 SLC35C1Q96A29 364 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 RIT2Q99578 217 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 SPATS2LQ9NUQ6 558 aaKnown RBP15.69■□□□□ 0.1
TCOF1-201ENST00000323668 IP6K2Q9UHH9 426 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 GTF3C4Q9UKN8 822 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 GOLGA8MH3BSY2 632 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 SMIM24O75264 130 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 SPAG7O75391 227 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 PTENP60484 403 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 PCGF5Q86SE9 256 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 ZBED8Q8IZ13 594 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 RBM15Q96T37 977 aaKnown RBP eCLIP15.69■□□□□ 0.1
TCOF1-201ENST00000323668 TIPINQ9BVW5 301 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 CD248Q9HCU0 757 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 SENP1Q9P0U3 644 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 GABBR1Q9UBS5 961 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 FNTAP49354 379 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 IRX4P78413 519 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 STRIP1Q5VSL9 837 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 ZBTB33Q86T24 672 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 CDKL2Q92772 493 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 OLFML3Q9NRN5 406 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 FAM53CQ9NYF3 392 aa15.69■□□□□ 0.1
TCOF1-201ENST00000323668 LTN1O94822 1766 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 LOC102724159A0A0B4J2E5 919 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 RARGP13631 454 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 TBXAS1P24557 533 aaPredicted RBP15.68■□□□□ 0.1
TCOF1-201ENST00000323668 ELF1P32519 619 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 PDIA2Q13087 525 aaKnown RBP15.68■□□□□ 0.1
TCOF1-201ENST00000323668 PWP2Q15269 919 aaKnown RBP15.68■□□□□ 0.1
TCOF1-201ENST00000323668 DNAJC19Q96DA6 116 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 POLLQ9UGP5 575 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 ZFP69BQ9UJL9 534 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 DDX3XO00571 662 aaKnown RBP eCLIP15.68■□□□□ 0.19e-17■■□□□ 11.8
TCOF1-201ENST00000323668 NFIAQ12857 509 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 NPY5RQ15761 445 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 TMC3Q7Z5M5 1100 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 DCTN4Q9UJW0 460 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 ZNF263O14978 683 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 GYG2O15488 501 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 SCTRP47872 440 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 PDE1BQ01064 536 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 RASIP1Q5U651 963 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 MREGQ8N565 214 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 TTC17Q96AE7 1141 aa15.68■□□□□ 0.1
TCOF1-201ENST00000323668 DDX23Q9BUQ8 820 aaKnown RBP15.68■□□□□ 0.1
TCOF1-201ENST00000323668 FAM129AQ9BZQ8 928 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms