RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.57■□□□□ 0.24
SF3B4-201ENST00000271628 AGO2Q9UKV8 859 aaKnown RBP16.57■□□□□ 0.24
SF3B4-201ENST00000271628 IGKV6-21A0A0C4DH24 114 aa16.57■□□□□ 0.24
SF3B4-201ENST00000271628 RBM47A0AV96 593 aaKnown RBP16.57■□□□□ 0.24
SF3B4-201ENST00000271628 MOCS3O95396 460 aa16.57■□□□□ 0.24
SF3B4-201ENST00000271628 MARK3P27448 753 aa16.57■□□□□ 0.24
SF3B4-201ENST00000271628 NAP1L1P55209 391 aaKnown RBP16.57■□□□□ 0.24
SF3B4-201ENST00000271628 CAPSQ13938 189 aa16.57■□□□□ 0.24
SF3B4-201ENST00000271628 PLCB4Q15147 1175 aa16.57■□□□□ 0.24
SF3B4-201ENST00000271628 BEND6Q5SZJ8 279 aaPredicted RBP16.57■□□□□ 0.24
SF3B4-201ENST00000271628 TAPT1Q6NXT6 567 aa16.57■□□□□ 0.24
SF3B4-201ENST00000271628 MAMDC4Q6UXC1 1216 aa16.57■□□□□ 0.24
SF3B4-201ENST00000271628 DPP9Q86TI2 863 aa16.57■□□□□ 0.24
SF3B4-201ENST00000271628 PSPC1Q8WXF1 523 aaKnown RBP16.57■□□□□ 0.24
SF3B4-201ENST00000271628 ERAP1Q9NZ08 941 aa16.57■□□□□ 0.24
SF3B4-201ENST00000271628 INTUQ9ULD6 942 aa16.57■□□□□ 0.24
SF3B4-201ENST00000271628 CAPN6Q9Y6Q1 641 aa16.57■□□□□ 0.24
SF3B4-201ENST00000271628 SIP14410 1827 aa16.56■□□□□ 0.24
SF3B4-201ENST00000271628 POLR3GO15318 223 aaPredicted RBP16.56■□□□□ 0.24
SF3B4-201ENST00000271628 MAPK4P31152 587 aa16.56■□□□□ 0.24
SF3B4-201ENST00000271628 IFI16Q16666 785 aaKnown RBP16.56■□□□□ 0.24
SF3B4-201ENST00000271628 ARHGAP44Q17R89 818 aa16.56■□□□□ 0.24
SF3B4-201ENST00000271628 GPR142Q7Z601 462 aa16.56■□□□□ 0.24
SF3B4-201ENST00000271628 FBXL13Q8NEE6 735 aa16.56■□□□□ 0.24
SF3B4-201ENST00000271628 COPS5Q92905 334 aa16.56■□□□□ 0.24
SF3B4-201ENST00000271628 RPGRIP1Q96KN7 1286 aa16.56■□□□□ 0.24
SF3B4-201ENST00000271628 FAM81BQ96LP2 452 aa16.56■□□□□ 0.24
SF3B4-201ENST00000271628 GH1P01241 217 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 GPC3P51654 580 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 MFAP3P55082 362 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 MAP2K1Q02750 393 aaPredicted RBP16.55■□□□□ 0.24
SF3B4-201ENST00000271628 GRB14Q14449 540 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 KIF22Q14807 665 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 ZPBP2Q6X784 338 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 ILDR2Q71H61 639 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 EMID1Q96A84 441 aaPredicted RBP16.55■□□□□ 0.24
SF3B4-201ENST00000271628 FNBP1Q96RU3 617 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 C2orf40Q9H1Z8 148 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 SUGCTQ9HAC7 445 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 RAB20Q9NX57 234 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 TSKSQ9UJT2 592 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 TRPC6Q9Y210 931 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 FOXN3O00409 490 aaPredicted RBP16.55■□□□□ 0.24
SF3B4-201ENST00000271628 KLRC1P26715 233 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 CLDN10P78369 228 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 CKAP4Q07065 602 aaKnown RBP16.55■□□□□ 0.24
SF3B4-201ENST00000271628 ARHGAP1Q07960 439 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 TRIM50Q86XT4 487 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 ZBTB8OSQ8IWT0 167 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 PNKPQ96T60 521 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 PTPN18Q99952 460 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.55■□□□□ 0.24
SF3B4-201ENST00000271628 SLC5A4Q9NY91 659 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 SALL4Q9UJQ4 1053 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 L1RE1Q9UN81 338 aa16.55■□□□□ 0.24
SF3B4-201ENST00000271628 ZBTB42B2RXF5 422 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 ASAP2O43150 1006 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 ZC3H11AO75152 810 aaKnown RBP eCLIP16.54■□□□□ 0.24
SF3B4-201ENST00000271628 DLATP10515 647 aaKnown RBP16.54■□□□□ 0.24
SF3B4-201ENST00000271628 PSMD6Q15008 389 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 SV2AQ7L0J3 742 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 PLEKHH3Q7Z736 793 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 PPTC7Q8NI37 304 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 SLC30A5Q8TAD4 765 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 POP1Q99575 1024 aaKnown RBP16.54■□□□□ 0.24
SF3B4-201ENST00000271628 CALCOCO1Q9P1Z2 691 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 HDAC6Q9UBN7 1215 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 NENFQ9UMX5 172 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 SNX12Q9UMY4 172 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 A0A0B4J269 797 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 DDX3XO00571 662 aaKnown RBP eCLIP16.54■□□□□ 0.242e-15■■■■□ 24.4
SF3B4-201ENST00000271628 BUB1O43683 1085 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 H2AFZP0C0S5 128 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 TCP1P17987 556 aaKnown RBP16.54■□□□□ 0.24
SF3B4-201ENST00000271628 TNFAIP3P21580 790 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 MATR3P43243 847 aaKnown RBP eCLIP16.54■□□□□ 0.243e-8■■■■■ 29.8
SF3B4-201ENST00000271628 LAMTOR4Q0VGL1 99 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 ZNF484Q5JVG2 852 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 CDCA2Q69YH5 1023 aaPredicted RBP16.54■□□□□ 0.24
SF3B4-201ENST00000271628 WDR93Q6P2C0 686 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 H2AFVQ71UI9 128 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 ARHGEF19Q8IW93 802 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 MSTO1Q9BUK6 570 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 TARS2Q9BW92 718 aaKnown RBP16.54■□□□□ 0.24
SF3B4-201ENST00000271628 MRPL4Q9BYD3 311 aaKnown RBP16.54■□□□□ 0.24
SF3B4-201ENST00000271628 PCDHGC5Q9Y5F6 944 aa16.54■□□□□ 0.24
SF3B4-201ENST00000271628 MYH10P35580 1976 aa16.53■□□□□ 0.24
SF3B4-201ENST00000271628 TULP1O00294 542 aaPredicted RBP16.53■□□□□ 0.24
SF3B4-201ENST00000271628 DRP2Q13474 957 aa16.53■□□□□ 0.24
SF3B4-201ENST00000271628 TFDP1Q14186 410 aa16.53■□□□□ 0.24
SF3B4-201ENST00000271628 CST9Q5W186 159 aa16.53■□□□□ 0.24
SF3B4-201ENST00000271628 ENOSF1Q7L5Y1 443 aa16.53■□□□□ 0.24
SF3B4-201ENST00000271628 PPM1KQ8N3J5 372 aa16.53■□□□□ 0.24
SF3B4-201ENST00000271628 MAML3Q96JK9 1138 aa16.53■□□□□ 0.24
SF3B4-201ENST00000271628 NT5C1BQ96P26 610 aa16.53■□□□□ 0.24
SF3B4-201ENST00000271628 ABHD16BQ9H3Z7 469 aa16.53■□□□□ 0.24
SF3B4-201ENST00000271628 A0A0A6YYK5 440 aaPredicted RBP16.52■□□□□ 0.24
SF3B4-201ENST00000271628 CLDN3O15551 220 aa16.52■□□□□ 0.24
SF3B4-201ENST00000271628 MSCO60682 206 aa16.52■□□□□ 0.24
SF3B4-201ENST00000271628 LRRN2O75325 713 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms