RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 SPATA2LQ8IUW3 424 aaPredicted RBP12.01□□□□□ -0.49
PTPN4-201ENST00000263708 RHOT2Q8IXI1 618 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 ELMO2Q96JJ3 720 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 KRCC1Q9NPI7 259 aaPredicted RBP12.01□□□□□ -0.49
PTPN4-201ENST00000263708 FAM107AO95990 144 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 ERAP2Q6P179 960 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 CCDC103Q8IW40 242 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 ST13P5Q8NFI4 369 aaPredicted RBP12.01□□□□□ -0.49
PTPN4-201ENST00000263708 RERGLQ9H628 205 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 NRBP1Q9UHY1 535 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 ATF5Q9Y2D1 282 aaPredicted RBP12.01□□□□□ -0.49
PTPN4-201ENST00000263708 MAP3K19Q56UN5 1328 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 RNASE11Q8TAA1 199 aaKnown RBP12.01□□□□□ -0.49
PTPN4-201ENST00000263708 KLHL31Q9H511 634 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 CDC25BP30305 580 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 DYNLL1P63167 89 aaKnown RBP12.01□□□□□ -0.49
PTPN4-201ENST00000263708 ERFEQ4G0M1 354 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 OOSP2Q86WS3 158 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 PBRM1Q86U86 1689 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 PRRG1O14668 218 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 NR1H3Q13133 447 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 CEP95Q96GE4 821 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 KIF2CQ99661 725 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 KRT84Q9NSB2 600 aa12.01□□□□□ -0.49
PTPN4-201ENST00000263708 ENO1P06733 434 aaKnown RBP12□□□□□ -0.49
PTPN4-201ENST00000263708 ADORA1P30542 326 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 PDIA2Q13087 525 aaKnown RBP12□□□□□ -0.49
PTPN4-201ENST00000263708 ASAP3Q8TDY4 903 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 MMP19Q99542 508 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 THAP9Q9H5L6 903 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 TSC22D4Q9Y3Q8 395 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 CDC25AP30304 524 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 GNA15P30679 374 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 FAM102AQ5T9C2 384 aaPredicted RBP12□□□□□ -0.49
PTPN4-201ENST00000263708 BBS7Q8IWZ6 715 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 TMEM106CQ9BVX2 250 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 RNPEPQ9H4A4 650 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 STOML1Q9UBI4 398 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 KCNH4Q9UQ05 1017 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 PLB1Q6P1J6 1458 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 COPB2P35606 906 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 TWF1Q12792 350 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 CATSPER1Q8NEC5 780 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 RAET1EQ8TD07 263 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 RNF25Q96BH1 459 aaPredicted RBP12□□□□□ -0.49
PTPN4-201ENST00000263708 SERPINB13Q9UIV8 391 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 PCDHGA4Q9Y5G9 962 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 POTEFA5A3E0 1075 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 P4HA2O15460 535 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 HNRNPRO43390 633 aaKnown RBP12□□□□□ -0.49
PTPN4-201ENST00000263708 PI4KBQ9UBF8 816 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 HMBSP08397 361 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 MAGOHP61326 146 aaKnown RBP12□□□□□ -0.49
PTPN4-201ENST00000263708 APOL5Q9BWW9 433 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 RNF14Q9UBS8 474 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 SLC9A2Q9UBY0 812 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 UPP2O95045 317 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 CLK1P49759 484 aaKnown RBP12□□□□□ -0.49
PTPN4-201ENST00000263708 DEFA1P59665 94 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 DEFA3P59666 94 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 TUBGCP3Q96CW5 907 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 GINS4Q9BRT9 223 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 FAM217BQ9NTX9 383 aaPredicted RBP12□□□□□ -0.49
PTPN4-201ENST00000263708 LRRIQ3A6PVS8 624 aaPredicted RBP12□□□□□ -0.49
PTPN4-201ENST00000263708 RAD23BP54727 409 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 LRRC36Q1X8D7 754 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 LRRC24Q50LG9 513 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 USPL1Q5W0Q7 1092 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 RIN3Q8TB24 985 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 ALG13Q9NP73 1137 aaKnown RBP12□□□□□ -0.49
PTPN4-201ENST00000263708 ITGAXP20702 1163 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 ARFIP2P53365 341 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 SLC25A13Q9UJS0 675 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 LSM7Q9UK45 103 aaKnown RBP12□□□□□ -0.49
PTPN4-201ENST00000263708 PNMA8BQ9ULN7 279 aaPredicted RBP12□□□□□ -0.49
PTPN4-201ENST00000263708 SNX24Q9Y343 169 aa12□□□□□ -0.49
PTPN4-201ENST00000263708 A0A1W2PP64 1363 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 USP17L3A6NCW0 530 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 USP17L4A6NCW7 530 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 TPI1P60174 286 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 RPS7P62081 194 aaKnown RBP11.99□□□□□ -0.49
PTPN4-201ENST00000263708 USP17L1Q7RTZ2 530 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 COMMD2Q86X83 199 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 IL1RL2Q9HB29 575 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 CFAP43Q8NDM7 1665 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 TEX14Q8IWB6 1497 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 NDUFS3O75489 264 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 TFDP2Q14188 446 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 PCSK7Q16549 785 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 CCDC81Q6ZN84 652 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 SPASTQ9UBP0 616 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 KIF21AQ7Z4S6 1674 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 EIF2S1P05198 315 aaKnown RBP11.99□□□□□ -0.49
PTPN4-201ENST00000263708 PDIA3P30101 505 aaKnown RBP11.99□□□□□ -0.49
PTPN4-201ENST00000263708 PHKA1P46020 1223 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 GPR1P46091 355 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 SULT1E1P49888 294 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 TMEM35BQ8NCS4 154 aa11.99□□□□□ -0.49
PTPN4-201ENST00000263708 MRPL1Q9BYD6 325 aaKnown RBP11.99□□□□□ -0.49
PTPN4-201ENST00000263708 GREM2Q9H772 168 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms