RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W IMP3P32899 183 aaPredicted RBP0.38□□□□□ -2.35
PRP42YDR235W NRG2P38082 220 aa0.38□□□□□ -2.35
PRP42YDR235W PHO89P38361 574 aa0.38□□□□□ -2.35
PRP42YDR235W SUR2P38992 349 aa0.38□□□□□ -2.35
PRP42YDR235W END3P39013 349 aa0.38□□□□□ -2.35
PRP42YDR235W SEN34P39707 275 aa0.38□□□□□ -2.35
PRP42YDR235W AIM20P40451 204 aa0.38□□□□□ -2.35
PRP42YDR235W AVT7P40501 490 aa0.38□□□□□ -2.35
PRP42YDR235W YJR146WP47174 117 aa0.38□□□□□ -2.35
PRP42YDR235W DAN1P47178 298 aa0.38□□□□□ -2.35
PRP42YDR235W MYO5Q04439 1219 aaKnown RBP0.38□□□□□ -2.35
PRP42YDR235W STE23Q06010 1027 aa0.38□□□□□ -2.35
PRP42YDR235W SPO77Q06134 477 aa0.38□□□□□ -2.35
PRP42YDR235W TAZ1Q06510 381 aa0.38□□□□□ -2.35
PRP42YDR235W ATG5Q12380 294 aa0.38□□□□□ -2.35
PRP42YDR235W YPR1Q12458 312 aa0.38□□□□□ -2.35
PRP42YDR235W YPR064WQ12492 139 aa0.38□□□□□ -2.35
PRP42YDR235W YHR086W-AQ3E746 53 aa0.38□□□□□ -2.35
PRP42YDR235W YEL009C-AA0A023PZF2 135 aa0.38□□□□□ -2.35
PRP42YDR235W RPL26AP05743 127 aaKnown RBP0.38□□□□□ -2.35
PRP42YDR235W RAD7P06779 565 aa0.38□□□□□ -2.35
PRP42YDR235W CAR2P07991 424 aaKnown RBP0.38□□□□□ -2.35
PRP42YDR235W GAL7P08431 366 aa0.38□□□□□ -2.35
PRP42YDR235W SCO1P23833 295 aa0.38□□□□□ -2.35
PRP42YDR235W ERG2P32352 222 aa0.38□□□□□ -2.35
PRP42YDR235W COT1P32798 439 aa0.38□□□□□ -2.35
PRP42YDR235W YKL063CP35725 167 aa0.38□□□□□ -2.35
PRP42YDR235W SWD2P36104 329 aaPredicted RBP0.38□□□□□ -2.35
PRP42YDR235W UIP5P36137 443 aa0.38□□□□□ -2.35
PRP42YDR235W SWC5P38326 303 aa0.38□□□□□ -2.35
PRP42YDR235W APE4P38821 490 aa0.38□□□□□ -2.35
PRP42YDR235W NAS2P40555 220 aa0.38□□□□□ -2.35
PRP42YDR235W GDS1P41913 522 aa0.38□□□□□ -2.35
PRP42YDR235W OST3P48439 350 aa0.38□□□□□ -2.35
PRP42YDR235W COG7P53195 279 aa0.38□□□□□ -2.35
PRP42YDR235W RPL26BP53221 127 aaKnown RBP0.38□□□□□ -2.35
PRP42YDR235W SLM2P53955 656 aa0.38□□□□□ -2.35
PRP42YDR235W YMR209CQ03648 457 aa0.38□□□□□ -2.35
PRP42YDR235W FCF1Q05498 189 aaPredicted RBP0.38□□□□□ -2.35
PRP42YDR235W DPP1Q05521 289 aa0.38□□□□□ -2.35
PRP42YDR235W YLR297WQ05899 129 aa0.38□□□□□ -2.35
PRP42YDR235W CTS2Q06350 511 aa0.38□□□□□ -2.35
PRP42YDR235W YOL019WQ08157 551 aa0.38□□□□□ -2.35
PRP42YDR235W APC9Q12107 265 aa0.38□□□□□ -2.35
PRP42YDR235W PAA1Q12447 191 aaKnown RBP0.38□□□□□ -2.35
PRP42YDR235W AGC1Q12482 902 aa0.38□□□□□ -2.35
PRP42YDR235W ISD11Q6Q560 94 aa0.38□□□□□ -2.35
PRP42YDR235W SPT7P35177 1332 aa0.37□□□□□ -2.35
PRP42YDR235W TDH1P00360 332 aaKnown RBP0.37□□□□□ -2.35
PRP42YDR235W CDC37P06101 506 aaKnown RBP0.37□□□□□ -2.35
PRP42YDR235W RAD10P06838 210 aa0.37□□□□□ -2.35
PRP42YDR235W DPM1P14020 267 aaKnown RBP0.37□□□□□ -2.35
PRP42YDR235W TFS1P14306 219 aa0.37□□□□□ -2.35
PRP42YDR235W KRE6P32486 720 aa0.37□□□□□ -2.35
PRP42YDR235W AEP1P32493 518 aa0.37□□□□□ -2.35
PRP42YDR235W SWI3P32591 825 aa0.37□□□□□ -2.35
PRP42YDR235W CAT2P32796 670 aaKnown RBP0.37□□□□□ -2.35
PRP42YDR235W RPS0AP32905 252 aaKnown RBP0.37□□□□□ -2.35
PRP42YDR235W POP8P38208 133 aa0.37□□□□□ -2.35
PRP42YDR235W YHR045WP38775 560 aa0.37□□□□□ -2.35
PRP42YDR235W POP2P39008 433 aa0.37□□□□□ -2.35
PRP42YDR235W CAJ1P39101 391 aa0.37□□□□□ -2.35
PRP42YDR235W YFR054CP43622 192 aa0.37□□□□□ -2.35
PRP42YDR235W COX16P47081 118 aa0.37□□□□□ -2.35
PRP42YDR235W YPT32P51996 222 aaKnown RBP0.37□□□□□ -2.35
PRP42YDR235W YPL039WQ03080 316 aa0.37□□□□□ -2.35
PRP42YDR235W YML018CQ03730 393 aa0.37□□□□□ -2.35
PRP42YDR235W ASR1Q06834 288 aa0.37□□□□□ -2.35
PRP42YDR235W RTC5Q12108 567 aaKnown RBP0.37□□□□□ -2.35
PRP42YDR235W YOR114WQ12219 294 aa0.37□□□□□ -2.35
PRP42YDR235W YMR316C-AI2HB70 103 aa0.36□□□□□ -2.35
PRP42YDR235W ADH3P07246 375 aaKnown RBP0.36□□□□□ -2.35
PRP42YDR235W PET18P25362 215 aa0.36□□□□□ -2.35
PRP42YDR235W ATG15P25641 520 aa0.36□□□□□ -2.35
PRP42YDR235W RPL5P26321 297 aaKnown RBP0.36□□□□□ -2.35
PRP42YDR235W BMH1P29311 267 aaKnown RBP0.36□□□□□ -2.35
PRP42YDR235W SUA5P32579 426 aa0.36□□□□□ -2.35
PRP42YDR235W SPT4P32914 102 aaPredicted RBP0.36□□□□□ -2.35
PRP42YDR235W BLI1P35727 113 aa0.36□□□□□ -2.35
PRP42YDR235W RPC37P36121 282 aa0.36□□□□□ -2.35
PRP42YDR235W GRE3P38715 327 aaKnown RBP RIP-Chip data0.36□□□□□ -2.35not detected
PRP42YDR235W ARN2P38724 620 aa0.36□□□□□ -2.35
PRP42YDR235W TDA11P38854 504 aa0.36□□□□□ -2.35
PRP42YDR235W SPT8P38915 602 aa0.36□□□□□ -2.35
PRP42YDR235W SSO2P39926 295 aa0.36□□□□□ -2.35
PRP42YDR235W SHQ1P40486 507 aaPredicted RBP0.36□□□□□ -2.35
PRP42YDR235W YIA6P40556 373 aa0.36□□□□□ -2.35
PRP42YDR235W GON7P46984 123 aa0.36□□□□□ -2.35
PRP42YDR235W YJL027CP47063 138 aaPredicted RBP0.36□□□□□ -2.35
PRP42YDR235W RIB4P50861 169 aaPredicted RBP0.36□□□□□ -2.35
PRP42YDR235W COS6P53344 381 aa0.36□□□□□ -2.35
PRP42YDR235W YPL077CQ02831 240 aa0.36□□□□□ -2.35
PRP42YDR235W ABZ2Q03266 374 aa0.36□□□□□ -2.35
PRP42YDR235W VPS20Q04272 221 aa0.36□□□□□ -2.35
PRP42YDR235W ECM18Q04623 453 aa0.36□□□□□ -2.35
PRP42YDR235W YDR286CQ05530 114 aa0.36□□□□□ -2.35
PRP42YDR235W DCR2Q05924 578 aa0.36□□□□□ -2.35
PRP42YDR235W YOR268CQ08734 132 aa0.36□□□□□ -2.35
PRP42YDR235W POM33Q12164 279 aa0.36□□□□□ -2.35
PRP42YDR235W SIA1Q12212 622 aa0.36□□□□□ -2.35
Retrieved 100 of 5,963 RNA–protein pairs in 27.8 ms