RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 GAPVD1Q14C86 1478 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SOS1Q07889 1333 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CFAP73A6NFT4 308 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 URADA6NGE7 173 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ADCY3O60266 1144 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CCT8P50990 548 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CDH13P55290 713 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ABCE1P61221 599 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 IRX5P78411 483 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 HPCAP84074 193 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ZC3H12BQ5HYM0 836 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PIGWQ7Z7B1 504 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 METTL16Q86W50 562 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 IGSF22Q8N9C0 903 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PROCA1Q8NCQ7 364 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ARHGAP45Q92619 1136 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 HES6Q96HZ4 224 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 VPS39Q96JC1 886 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 TTYH1Q9H313 450 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 DNAJC5Q9H3Z4 198 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 GMEB2Q9UKD1 530 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 BDP1A6H8Y1 2624 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 GNGT2O14610 69 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 NVLO15381 856 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 TRIM37O94972 964 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PLEKHA8P1O95397 391 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CASP2P42575 452 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 GPR1P46091 355 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SRP54P61011 504 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 KLC3Q6P597 504 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 RHPN2Q8IUC4 686 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 HCAR2Q8TDS4 363 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SPATA9Q9BWV2 254 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CAAP1Q9H8G2 361 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PLEKHA5Q9HAU0 1116 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ZNF304Q9HCX3 659 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 HOMER3Q9NSC5 361 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PRR12Q9ULL5 1215 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SCAF8Q9UPN6 1271 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ATP8A1Q9Y2Q0 1164 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CACNA1SQ13698 1873 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 TTC28Q96AY4 2481 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 F8VZ95 297 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PIK3CDO00329 1044 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CDC40O60508 579 aaKnown RBP eCLIP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ERVK-10P10266 1014 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 RALAP11233 206 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ATP5JP18859 108 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PHKA1P46020 1223 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CPT1AP50416 773 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 DEFA1P59665 94 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 DEFA3P59666 94 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 GTF2IP78347 998 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CREMQ03060 361 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PPARDQ03181 441 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ITKQ08881 620 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 TEAD4Q15561 434 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 TRIM71Q2Q1W2 868 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 TJAP1Q5JTD0 557 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 KLHL29Q96CT2 875 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CCDC17Q96LX7 622 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CXorf56Q9H5V9 222 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PDE11AQ9HCR9 933 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SH3GLB2Q9NR46 395 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 TBK1Q9UHD2 729 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 GPN3Q9UHW5 284 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 REREQ9P2R6 1566 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CUL7Q14999 1698 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SNAPC4Q5SXM2 1469 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 TRIM64A6NGJ6 449 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 H0Y3Z8 333 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PLCD1P51178 756 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 RNASE9P60153 205 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CYTH1Q15438 398 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SLC27A3Q5K4L6 730 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 GALNT18Q6P9A2 607 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 TRMT1LQ7Z2T5 733 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 S100A7AQ86SG5 101 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 RGL4Q8IZJ4 473 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 KRT78Q8N1N4 520 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 MRRFQ96E11 262 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 MPHOSPH9Q99550 1183 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CARD14Q9BXL6 1004 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 EPC1Q9H2F5 836 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 DMGDHQ9UI17 866 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 GLS2Q9UI32 602 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ATF5Q9Y2D1 282 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 NCKAP5O14513 1909 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CCDC168Q8NDH2 2452 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 TPD52L2O43399 206 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 WDR47O94967 919 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 RPN2P04844 631 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 IL9RQ01113 521 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ARHGAP11AQ6P4F7 1023 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 UTS2BQ765I0 119 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 UBE2Q1Q7Z7E8 422 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 DSG4Q86SJ6 1040 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ADSSL1Q8N142 457 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 MAGEC3Q8TD91 643 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SLC16A10Q8TF71 515 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms