RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 GPR108Q9NPR9 543 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 SLC39A10Q9ULF5 831 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 PCDHGA4Q9Y5G9 962 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 MAP3K4Q9Y6R4 1608 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 H0Y626 953 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 GOLGA8RI6L899 631 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 PSMD12O00232 456 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 TLR2O60603 784 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 TCP1P17987 556 aaKnown RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 QARSP47897 775 aaKnown RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 COPS2P61201 443 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 LAMC2Q13753 1193 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 RCN2Q14257 317 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 LONRF3Q496Y0 759 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 CATSPERBQ9H7T0 1116 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 GABBR1Q9UBS5 961 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 KLHL3Q9UH77 587 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 MYH11P35749 1972 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 CCDC189A1A4V9 331 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 SYCE1LA8MT33 242 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 SLC9A1P19634 815 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 NCF2P19878 526 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 TPI1P60174 286 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 KRT78Q8N1N4 520 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 OR6P1Q8NGX9 317 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 PACSIN2Q9UNF0 486 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 ATP7BP35670 1465 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 MANSC4A6NHS7 340 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 DYNC1LI2O43237 492 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 LZTS3O60299 673 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 AARSP49588 968 aaKnown RBP eCLIP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 GTF2A1P52655 376 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 MORF4L2Q15014 288 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 TJAP1Q5JTD0 557 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 STYK1Q6J9G0 422 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 B4GALNT2Q8NHY0 566 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 TIPINQ9BVW5 301 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 FAM217BQ9NTX9 383 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 ERAP1Q9NZ08 941 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 HDAC6Q9UBN7 1215 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 PKP3Q9Y446 797 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 UTYO14607 1347 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 RGS4P49798 205 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 CACNB2Q08289 660 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 MTX1Q13505 466 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 TFDP2Q14188 446 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 ERAP2Q6P179 960 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 TRIM72Q6ZMU5 477 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 TRMT10CQ7L0Y3 403 aaKnown RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 G2E3Q7L622 706 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 RASSF3Q86WH2 238 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 HERC6Q8IVU3 1022 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 GGA3Q9NZ52 723 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 SNX14Q9Y5W7 946 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 SPHKAPQ2M3C7 1700 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 FAM47DPA6NHR8 397 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 LCP1P13796 627 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 GUCY2FP51841 1108 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 PSMC5P62195 406 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 PRKAA1Q13131 559 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 CRLF3Q8IUI8 442 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 SLC7A14Q8TBB6 771 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 PLEKHA5Q9HAU0 1116 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 HEY1Q9Y5J3 304 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 ASAP2O43150 1006 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 HSPA4LO95757 839 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 CTTNQ14247 550 aaKnown RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 STRIP1Q5VSL9 837 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 TBC1D1Q86TI0 1168 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 RGL4Q8IZJ4 473 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 ATPAF2Q8N5M1 289 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 RAPGEF5Q92565 580 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 PAPOLBQ9NRJ5 636 aaKnown RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 KLHL11Q9NVR0 708 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 SCOCQ9UIL1 159 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 MYBL2P10244 700 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 GTF2E2P29084 291 aaKnown RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 DYNLL1P63167 89 aaKnown RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 HDLBPQ00341 1268 aaKnown RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 PHACTR4Q8IZ21 702 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 SRBD1Q8N5C6 995 aaKnown RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 FAM96AQ9H5X1 160 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 GBA2Q9HCG7 927 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 SEC31BQ9NQW1 1179 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 FAM32AQ9Y421 112 aaKnown RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 DAAM1Q9Y4D1 1078 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 MAN2A1Q16706 1144 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 LRRC24Q50LG9 513 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 SPDYAQ5MJ70 313 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 C9orf131Q5VYM1 1079 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 GLYCTKQ8IVS8 523 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 DNAJC1Q96KC8 554 aaKnown RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 MCCC1Q96RQ3 725 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 FOXP3Q9BZS1 431 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 COPS7BQ9H9Q2 264 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 BRPF3Q9ULD4 1205 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 DTNAQ9Y4J8 743 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 CRB1P82279 1406 aa6.49□□□□□ -1.37
SCN1A-217ENST00000637988 GOLGA4Q13439 2230 aaKnown RBP6.49□□□□□ -1.37
SCN1A-217ENST00000637988 MAFGO15525 162 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms