RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 FAM53CQ9NYF3 392 aa19.96■□□□□ 0.79
CLN3-263ENST00000637871 PUF60Q9UHX1 559 aaKnown RBP19.96■□□□□ 0.79
CLN3-263ENST00000637871 SNX12Q9UMY4 172 aa19.96■□□□□ 0.79
CLN3-263ENST00000637871 USP20Q9Y2K6 914 aa19.96■□□□□ 0.79
CLN3-263ENST00000637871 DGAT1O75907 488 aa19.95■□□□□ 0.78
CLN3-263ENST00000637871 CYBAP13498 195 aa19.95■□□□□ 0.78
CLN3-263ENST00000637871 DMP1Q13316 513 aaPredicted RBP19.95■□□□□ 0.78
CLN3-263ENST00000637871 SEPT14Q6ZU15 432 aa19.95■□□□□ 0.78
CLN3-263ENST00000637871 ZNF572Q7Z3I7 529 aaPredicted RBP19.95■□□□□ 0.78
CLN3-263ENST00000637871 MPHOSPH6Q99547 160 aaKnown RBP19.95■□□□□ 0.78
CLN3-263ENST00000637871 HYOU1Q9Y4L1 999 aa19.95■□□□□ 0.78
CLN3-263ENST00000637871 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.94■□□□□ 0.78
CLN3-263ENST00000637871 BACH1O14867 736 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 ADCY6O43306 1168 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 ZRANB2O95218 330 aaKnown RBP eCLIP19.94■□□□□ 0.78
CLN3-263ENST00000637871 CYP2J2P51589 502 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 ACVR2BQ13705 512 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 MTFR1Q15390 333 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 KRT222Q8N1A0 295 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 MSL3Q8N5Y2 521 aaKnown RBP19.94■□□□□ 0.78
CLN3-263ENST00000637871 CALR3Q96L12 384 aaKnown RBP19.94■□□□□ 0.78
CLN3-263ENST00000637871 FHOD1Q9Y613 1164 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 DOCK5Q9H7D0 1870 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 TARSL2A2RTX5 802 aaKnown RBP19.94■□□□□ 0.78
CLN3-263ENST00000637871 ZNF865P0CJ78 1059 aaPredicted RBP19.94■□□□□ 0.78
CLN3-263ENST00000637871 CNGA1P29973 690 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 ADCYAP1R1P41586 468 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 MYL7Q01449 175 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 PKN2Q16513 984 aaKnown RBP19.94■□□□□ 0.78
CLN3-263ENST00000637871 XKR3Q5GH77 459 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 GJC2Q5T442 439 aaPredicted RBP19.94■□□□□ 0.78
CLN3-263ENST00000637871 MAP3K21Q5TCX8 1036 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.94■□□□□ 0.78
CLN3-263ENST00000637871 BCAS3Q9H6U6 928 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 POLD4Q9HCU8 107 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 GABBR1Q9UBS5 961 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 PPME1Q9Y570 386 aa19.94■□□□□ 0.78
CLN3-263ENST00000637871 MYH11P35749 1972 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 A0A0A6YYK5 440 aaPredicted RBP19.93■□□□□ 0.78
CLN3-263ENST00000637871 KIAA0391O15091 583 aaKnown RBP19.93■□□□□ 0.78
CLN3-263ENST00000637871 SORBS3O60504 671 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 ARIH2O95376 493 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 ACTN1P12814 892 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 SOX5P35711 763 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 VAMP7P51809 220 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 UGCGQ16739 394 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 FAM102BQ5T8I3 360 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 TAPT1Q6NXT6 567 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 WDR93Q6P2C0 686 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 ABHD15Q6UXT9 468 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 MAP4K3Q8IVH8 894 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 LMBR1Q8WVP7 490 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 CEP170P1Q96L14 293 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 UNC93B1Q9H1C4 597 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 ABHD16BQ9H3Z7 469 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 APEX2Q9UBZ4 518 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 ADAMTS1Q9UHI8 967 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 DUSP10Q9Y6W6 482 aa19.93■□□□□ 0.78
CLN3-263ENST00000637871 ENC1O14682 589 aa19.92■□□□□ 0.78
CLN3-263ENST00000637871 ATG7O95352 703 aa19.92■□□□□ 0.78
CLN3-263ENST00000637871 PEX3P56589 373 aa19.92■□□□□ 0.78
CLN3-263ENST00000637871 CC2D1AQ6P1N0 951 aaPredicted RBP19.92■□□□□ 0.78
CLN3-263ENST00000637871 ANO5Q75V66 913 aa19.92■□□□□ 0.78
CLN3-263ENST00000637871 IFT74Q96LB3 600 aa19.92■□□□□ 0.78
CLN3-263ENST00000637871 INTS2Q9H0H0 1204 aaKnown RBP19.92■□□□□ 0.78
CLN3-263ENST00000637871 VTA1Q9NP79 307 aa19.92■□□□□ 0.78
CLN3-263ENST00000637871 A0A087X0T9 212 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 LOC102724159A0A0B4J2E5 919 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 CES2O00748 559 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 MOCS3O95396 460 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 SUPT20HL2P0C7V6 817 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 FAM228BP0C875 321 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 TGFB3P10600 412 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 ZSCAN20P17040 1043 aaPredicted RBP19.91■□□□□ 0.78
CLN3-263ENST00000637871 GTF2H1P32780 548 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 PAFAH1B1P43034 410 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 ACTR2P61160 394 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 PTK2Q05397 1052 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 PWP2Q15269 919 aaKnown RBP19.91■□□□□ 0.78
CLN3-263ENST00000637871 KIAA0753Q2KHM9 967 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 TMEM161BQ8NDZ6 487 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 CAGE1Q8TC20 777 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 KMT5AQ9NQR1 393 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 PDLIM7Q9NR12 457 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 HSPBP1Q9NZL4 362 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 TBX20Q9UMR3 447 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 PCDHGC5Q9Y5F6 944 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 STBD1O95210 358 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 NPTX2P47972 431 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 NPEPPSP55786 919 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 ALKBH5Q6P6C2 394 aaKnown RBP19.91■□□□□ 0.78
CLN3-263ENST00000637871 KCNV1Q6PIU1 500 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 ZNF571Q7Z3V5 609 aaPredicted RBP19.91■□□□□ 0.78
CLN3-263ENST00000637871 TMC2Q8TDI7 906 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 COPS5Q92905 334 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 ZNF333Q96JL9 665 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 FAM81BQ96LP2 452 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 ANKZF1Q9H8Y5 726 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 ATP6V0A4Q9HBG4 840 aa19.91■□□□□ 0.78
CLN3-263ENST00000637871 KIAA1586Q9HCI6 787 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms