RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 KCNA10Q16322 511 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 FAM187BQ17R55 369 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 RUFY4Q6ZNE9 571 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 CBWD2Q8IUF1 395 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 ZBTB45Q96K62 511 aaPredicted RBP20.09■□□□□ 0.81
CLN3-254ENST00000637050 ACO2Q99798 780 aaKnown RBP20.09■□□□□ 0.81
CLN3-254ENST00000637050 INO80BQ9C086 356 aaPredicted RBP20.09■□□□□ 0.81
CLN3-254ENST00000637050 TTYH3Q9C0H2 523 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 HAPLN2Q9GZV7 340 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 KIAA1586Q9HCI6 787 aa20.09■□□□□ 0.81
CLN3-254ENST00000637050 TREHO43280 583 aa20.08■□□□□ 0.81
CLN3-254ENST00000637050 EXTL3O43909 919 aa20.08■□□□□ 0.81
CLN3-254ENST00000637050 TOM1L1O75674 476 aa20.08■□□□□ 0.81
CLN3-254ENST00000637050 TPM1P09493 284 aa20.08■□□□□ 0.81
CLN3-254ENST00000637050 VAMP7P51809 220 aa20.08■□□□□ 0.81
CLN3-254ENST00000637050 ADKP55263 362 aaKnown RBP20.08■□□□□ 0.81
CLN3-254ENST00000637050 NLRP11P59045 1033 aaKnown RBP20.08■□□□□ 0.81
CLN3-254ENST00000637050 CCZ1BP86790 482 aa20.08■□□□□ 0.81
CLN3-254ENST00000637050 CCZ1P86791 482 aaPredicted RBP20.08■□□□□ 0.81
CLN3-254ENST00000637050 GOLGA8FQ08AF8 430 aa20.08■□□□□ 0.81
CLN3-254ENST00000637050 GOLGA8DPQ0D2H9 430 aa20.08■□□□□ 0.81
CLN3-254ENST00000637050 NBPF20Q3BBV1 942 aa20.08■□□□□ 0.81
CLN3-254ENST00000637050 PCSK9Q8NBP7 692 aaKnown RBP20.08■□□□□ 0.81
CLN3-254ENST00000637050 CPLX3Q8WVH0 158 aa20.08■□□□□ 0.81
CLN3-254ENST00000637050 IQCDQ96DY2 449 aa20.08■□□□□ 0.81
CLN3-254ENST00000637050 MFSD14AQ96MC6 490 aa20.08■□□□□ 0.81
CLN3-254ENST00000637050 HMX1Q9NP08 348 aaPredicted RBP20.08■□□□□ 0.81
CLN3-254ENST00000637050 PRMT7Q9NVM4 692 aaPredicted RBP20.08■□□□□ 0.81
CLN3-254ENST00000637050 AGO2Q9UKV8 859 aaKnown RBP20.08■□□□□ 0.81
CLN3-254ENST00000637050 MFAP3LO75121 409 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 IQCF3P0C7M6 154 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 C1QTNF8P60827 252 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 ZNF200P98182 395 aaPredicted RBP20.07■□□□□ 0.8
CLN3-254ENST00000637050 ENPEPQ07075 957 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 HSP90AA2PQ14568 343 aaPredicted RBP20.07■□□□□ 0.8
CLN3-254ENST00000637050 TSHZ1Q6ZSZ6 1077 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 CNGA4Q8IV77 575 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 NLRP7Q8WX94 980 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 PCMTD1Q96MG8 357 aaPredicted RBP20.07■□□□□ 0.8
CLN3-254ENST00000637050 PPP1R16BQ96T49 567 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 FAM49AQ9H0Q0 323 aaPredicted RBP20.07■□□□□ 0.8
CLN3-254ENST00000637050 ADAMTS10Q9H324 1103 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 TMX1Q9H3N1 280 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 CAPN11Q9UMQ6 739 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 TTC26A0AVF1 554 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 GTPBP10A4D1E9 387 aaKnown RBP20.07■□□□□ 0.8
CLN3-254ENST00000637050 RNF225M0QZC1 329 aaPredicted RBP20.07■□□□□ 0.8
CLN3-254ENST00000637050 ABLIM1O14639 778 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 GPR32O75388 356 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 LDHAP00338 332 aaKnown RBP20.07■□□□□ 0.8
CLN3-254ENST00000637050 TRIM49P0CI25 452 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 TRIM49CP0CI26 452 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 TRIM21P19474 475 aaKnown RBP20.07■□□□□ 0.8
CLN3-254ENST00000637050 PROZP22891 400 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 PRPF4BQ13523 1007 aaKnown RBP20.07■□□□□ 0.8
CLN3-254ENST00000637050 SRGAP1Q7Z6B7 1085 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 RNF180Q86T96 592 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 PLEKHO2Q8TD55 490 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 TMC2Q8TDI7 906 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 PRIMPOLQ96LW4 560 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 PANX2Q96RD6 677 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 FAM213AQ9BRX8 229 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 MSTO1Q9BUK6 570 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 PTPRHQ9HD43 1115 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 ANKFY1Q9P2R3 1169 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 GTF2IRD1Q9UHL9 959 aa20.07■□□□□ 0.8
CLN3-254ENST00000637050 A0A1W2PQJ5 194 aa20.06■□□□□ 0.8
CLN3-254ENST00000637050 CLDN3O15551 220 aa20.06■□□□□ 0.8
CLN3-254ENST00000637050 FMO5P49326 533 aa20.06■□□□□ 0.8
CLN3-254ENST00000637050 DLG4P78352 724 aa20.06■□□□□ 0.8
CLN3-254ENST00000637050 CYP24A1Q07973 514 aa20.06■□□□□ 0.8
CLN3-254ENST00000637050 AMHR2Q16671 573 aa20.06■□□□□ 0.8
CLN3-254ENST00000637050 C1orf220Q5T0J3 134 aa20.06■□□□□ 0.8
CLN3-254ENST00000637050 LHX8Q68G74 356 aa20.06■□□□□ 0.8
CLN3-254ENST00000637050 SESTD1Q86VW0 696 aa20.06■□□□□ 0.8
CLN3-254ENST00000637050 CCDC51Q96ER9 411 aa20.06■□□□□ 0.8
CLN3-254ENST00000637050 MMRN2Q9H8L6 949 aa20.06■□□□□ 0.8
CLN3-254ENST00000637050 ZNF233A6NK53 670 aa20.05■□□□□ 0.8
CLN3-254ENST00000637050 ESPNB1AK53 854 aa20.05■□□□□ 0.8
CLN3-254ENST00000637050 B4GALT5O43286 388 aa20.05■□□□□ 0.8
CLN3-254ENST00000637050 MCL1Q07820 350 aa20.05■□□□□ 0.8
CLN3-254ENST00000637050 ATF7IP2Q5U623 682 aa20.05■□□□□ 0.8
CLN3-254ENST00000637050 CRELD2Q6UXH1 353 aaPredicted RBP20.05■□□□□ 0.8
CLN3-254ENST00000637050 CCDC112Q8NEF3 446 aa20.05■□□□□ 0.8
CLN3-254ENST00000637050 PARD3BQ8TEW8 1205 aa20.05■□□□□ 0.8
CLN3-254ENST00000637050 DNAJB3Q8WWF6 145 aa20.05■□□□□ 0.8
CLN3-254ENST00000637050 SCLT1Q96NL6 688 aa20.05■□□□□ 0.8
CLN3-254ENST00000637050 CRACR2AQ9BSW2 395 aa20.05■□□□□ 0.8
CLN3-254ENST00000637050 FAM207AQ9NSI2 230 aaPredicted RBP20.05■□□□□ 0.8
CLN3-254ENST00000637050 TNFSF13BQ9Y275 285 aa20.05■□□□□ 0.8
CLN3-254ENST00000637050 PTPN22Q9Y2R2 807 aa20.05■□□□□ 0.8
CLN3-254ENST00000637050 LUC7L2Q9Y383 392 aaKnown RBP20.05■□□□□ 0.8
CLN3-254ENST00000637050 CNTNAP2Q9UHC6 1331 aa20.05■□□□□ 0.8
CLN3-254ENST00000637050 PCNTO95613 3336 aa20.04■□□□□ 0.8
CLN3-254ENST00000637050 EPHB6O15197 1021 aa20.04■□□□□ 0.8
CLN3-254ENST00000637050 CSDE1O75534 798 aaKnown RBP20.04■□□□□ 0.8
CLN3-254ENST00000637050 SKILP12757 684 aa20.04■□□□□ 0.8
CLN3-254ENST00000637050 MATR3P43243 847 aaKnown RBP eCLIP20.04■□□□□ 0.8
CLN3-254ENST00000637050 EXOC3L4Q17RC7 722 aa20.04■□□□□ 0.8
CLN3-254ENST00000637050 KIZQ2M2Z5 673 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms