RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 CEP89Q96ST8 783 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 FAM213AQ9BRX8 229 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 FUT8Q9BYC5 575 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 TSKSQ9UJT2 592 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 LRRC37A2A6NM11 1700 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 LRRIQ4A6NIV6 560 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 SOCS7O14512 581 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 CCDC172P0C7W6 258 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 DLATP10515 647 aaKnown RBP16.94■□□□□ 0.3
CLN3-251ENST00000636853 TNFAIP3P21580 790 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 TCF7P36402 384 aaPredicted RBP16.94■□□□□ 0.3
CLN3-251ENST00000636853 MATR3P43243 847 aaKnown RBP eCLIP16.94■□□□□ 0.3
CLN3-251ENST00000636853 STAT5BP51692 787 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 CYP24A1Q07973 514 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 KIF22Q14807 665 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 BEND6Q5SZJ8 279 aaPredicted RBP16.94■□□□□ 0.3
CLN3-251ENST00000636853 ARMC9Q7Z3E5 817 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 PALB2Q86YC2 1186 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 GPD1LQ8N335 351 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 SPATA4Q8NEY3 305 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 SLC20A1Q8WUM9 679 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 FAM84AQ96KN4 292 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 MFSD14AQ96MC6 490 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 NIFKQ9BYG3 293 aaKnown RBP16.94■□□□□ 0.3
CLN3-251ENST00000636853 PORCNQ9H237 461 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 SUGCTQ9HAC7 445 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 CALCOCO1Q9P1Z2 691 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 DAAM1Q9Y4D1 1078 aa16.94■□□□□ 0.3
CLN3-251ENST00000636853 ZMYND10O75800 440 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 OSBPP22059 807 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 USP8P40818 1118 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 LIG4P49917 911 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 KRT39Q6A163 491 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 FASTKD5Q7L8L6 764 aaKnown RBP16.93■□□□□ 0.3
CLN3-251ENST00000636853 ZNF572Q7Z3I7 529 aaPredicted RBP16.93■□□□□ 0.3
CLN3-251ENST00000636853 PPM1KQ8N3J5 372 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 HNRNPLLQ8WVV9 542 aaKnown RBP16.93■□□□□ 0.3
CLN3-251ENST00000636853 SLC7A3Q8WY07 619 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 MMP19Q99542 508 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 ST7Q9NRC1 585 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 TAS2R14Q9NYV8 317 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 MCM3APO60318 1980 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 PMM2O15305 246 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 TGFB3P10600 412 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 ABCB4P21439 1286 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 GARTP22102 1010 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 ARL2P36404 184 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 WDR93Q6P2C0 686 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 METTL7BQ6UX53 244 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 TPCN2Q8NHX9 752 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 SEPT1Q8WYJ6 367 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 KREMEN1Q96MU8 473 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 HINFPQ9BQA5 517 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 TMEM8AQ9HCN3 771 aa16.93■□□□□ 0.3
CLN3-251ENST00000636853 H0YCG3 227 aa16.92■□□□□ 0.3
CLN3-251ENST00000636853 ATP8B1O43520 1251 aa16.92■□□□□ 0.3
CLN3-251ENST00000636853 ERLIN1O75477 346 aa16.92■□□□□ 0.3
CLN3-251ENST00000636853 MARK3P27448 753 aa16.92■□□□□ 0.3
CLN3-251ENST00000636853 PAFAH1B1P43034 410 aa16.92■□□□□ 0.3
CLN3-251ENST00000636853 MCCD1P59942 119 aaPredicted RBP16.92■□□□□ 0.3
CLN3-251ENST00000636853 MRPS25P82663 173 aaKnown RBP16.92■□□□□ 0.3
CLN3-251ENST00000636853 STRN3Q13033 797 aa16.92■□□□□ 0.3
CLN3-251ENST00000636853 KCTD2Q14681 263 aa16.92■□□□□ 0.3
CLN3-251ENST00000636853 FMNL3Q8IVF7 1028 aa16.92■□□□□ 0.3
CLN3-251ENST00000636853 DEPTORQ8TB45 409 aa16.92■□□□□ 0.3
CLN3-251ENST00000636853 TMC2Q8TDI7 906 aa16.92■□□□□ 0.3
CLN3-251ENST00000636853 TAS1R2Q8TE23 839 aa16.92■□□□□ 0.3
CLN3-251ENST00000636853 AGPAT1Q99943 283 aa16.92■□□□□ 0.3
CLN3-251ENST00000636853 TAF1DQ9H5J8 278 aaPredicted RBP16.92■□□□□ 0.3
CLN3-251ENST00000636853 NRBP2Q9NSY0 501 aa16.92■□□□□ 0.3
CLN3-251ENST00000636853 INTUQ9ULD6 942 aa16.92■□□□□ 0.3
CLN3-251ENST00000636853 CYP2C8P10632 490 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 SLC20A2Q08357 652 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 DRP2Q13474 957 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 TARBP2Q15633 366 aaKnown RBP16.91■□□□□ 0.3
CLN3-251ENST00000636853 IFI16Q16666 785 aaKnown RBP16.91■□□□□ 0.3
CLN3-251ENST00000636853 HSDL1Q3SXM5 330 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 FAM160B1Q5W0V3 765 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 TRIM50Q86XT4 487 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 FBXO16Q8IX29 292 aaPredicted RBP16.91■□□□□ 0.3
CLN3-251ENST00000636853 LRRC57Q8N9N7 239 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 ZBTB45Q96K62 511 aaPredicted RBP16.91■□□□□ 0.3
CLN3-251ENST00000636853 ZNF408Q9H9D4 720 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 ZNFX1Q9P2E3 1918 aaKnown RBP16.91■□□□□ 0.3
CLN3-251ENST00000636853 DNAJC25-GNG10A0A024R161 153 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 NAMPTP43490 491 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 RNASE9P60153 205 aaKnown RBP16.91■□□□□ 0.3
CLN3-251ENST00000636853 TMEM63BQ5T3F8 832 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 SV2AQ7L0J3 742 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 MMGT1Q8N4V1 131 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 HAPLN2Q9GZV7 340 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 OSGEPQ9NPF4 335 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 ACP6Q9NPH0 428 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 COQ4Q9Y3A0 265 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 ATP8B3O60423 1300 aa16.91■□□□□ 0.3
CLN3-251ENST00000636853 A0A0A6YYK5 440 aaPredicted RBP16.9■□□□□ 0.3
CLN3-251ENST00000636853 GLTPD2A6NH11 291 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 ZNF233A6NK53 670 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 K7ERI5 159 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 SGPL1O95470 568 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms