RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 TTC26A0AVF1 554 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 ASAP2O43150 1006 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 PIGRP01833 764 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 HARSP12081 509 aaKnown RBP21.94■■□□□ 1.1
CLN3-250ENST00000636839 SFPQP23246 707 aaKnown RBP eCLIP21.94■■□□□ 1.1
CLN3-250ENST00000636839 ACOT2P49753 483 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 NKX3-2P78367 333 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 MAPK6Q16659 721 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 C1orf220Q5T0J3 134 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 ZBTB33Q86T24 672 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 DNAJB3Q8WWF6 145 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 NLRP7Q8WX94 980 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 POP1Q99575 1024 aaKnown RBP21.94■■□□□ 1.1
CLN3-250ENST00000636839 FZD8Q9H461 694 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 AGPAT5Q9NUQ2 364 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 STYXL1Q9Y6J8 313 aa21.94■■□□□ 1.1
CLN3-250ENST00000636839 SIP14410 1827 aa21.93■■□□□ 1.1
CLN3-250ENST00000636839 AFPP02771 609 aaKnown RBP21.93■■□□□ 1.1
CLN3-250ENST00000636839 FGFR4P22455 802 aa21.93■■□□□ 1.1
CLN3-250ENST00000636839 GPC3P51654 580 aa21.93■■□□□ 1.1
CLN3-250ENST00000636839 BFSP1Q12934 665 aa21.93■■□□□ 1.1
CLN3-250ENST00000636839 MAP7D2Q96T17 732 aa21.93■■□□□ 1.1
CLN3-250ENST00000636839 ACO2Q99798 780 aaKnown RBP21.93■■□□□ 1.1
CLN3-250ENST00000636839 KATNAL1Q9BW62 490 aa21.93■■□□□ 1.1
CLN3-250ENST00000636839 WBP1LQ9NX94 342 aa21.93■■□□□ 1.1
CLN3-250ENST00000636839 C17orf102A2RUQ5 167 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 GARTP22102 1010 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 WNT7BP56706 349 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 C1QTNF8P60827 252 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 CBWD6Q4V339 395 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 CBWD3Q5JTY5 395 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 CBWD5Q5RIA9 395 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 CCDC127Q96BQ5 260 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 C2orf40Q9H1Z8 148 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.92■■□□□ 1.1
CLN3-250ENST00000636839 GRIN2DO15399 1336 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 AKR1B15C9JRZ8 316 aaPredicted RBP21.92■■□□□ 1.1
CLN3-250ENST00000636839 ACTN1P12814 892 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 MATR3P43243 847 aaKnown RBP eCLIP21.92■■□□□ 1.1
CLN3-250ENST00000636839 LHX8Q68G74 356 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 ZSCAN30Q86W11 494 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 GPIHBP1Q8IV16 184 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 SLAIN1Q8ND83 568 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 FBXL18Q96ME1 805 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 SCLT1Q96NL6 688 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 MRPL4Q9BYD3 311 aaKnown RBP21.92■■□□□ 1.1
CLN3-250ENST00000636839 TTYH3Q9C0H2 523 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 ADAMTS10Q9H324 1103 aa21.92■■□□□ 1.1
CLN3-250ENST00000636839 A0A0B4J269 797 aa21.91■■□□□ 1.1
CLN3-250ENST00000636839 ACKR2O00590 384 aa21.91■■□□□ 1.1
CLN3-250ENST00000636839 KPNA6O60684 536 aa21.91■■□□□ 1.1
CLN3-250ENST00000636839 MFAP3LO75121 409 aa21.91■■□□□ 1.1
CLN3-250ENST00000636839 SKILP12757 684 aa21.91■■□□□ 1.1
CLN3-250ENST00000636839 SLC9A1P19634 815 aa21.91■■□□□ 1.1
CLN3-250ENST00000636839 HOXC8P31273 242 aa21.91■■□□□ 1.1
CLN3-250ENST00000636839 ABCD1P33897 745 aa21.91■■□□□ 1.1
CLN3-250ENST00000636839 PHKA2P46019 1235 aa21.91■■□□□ 1.1
CLN3-250ENST00000636839 VAMP7P51809 220 aa21.91■■□□□ 1.1
CLN3-250ENST00000636839 PPP3CAQ08209 521 aa21.91■■□□□ 1.1
CLN3-250ENST00000636839 EEF1DP3Q658K8 133 aa21.91■■□□□ 1.1
CLN3-250ENST00000636839 CRELD2Q6UXH1 353 aaPredicted RBP21.91■■□□□ 1.1
CLN3-250ENST00000636839 GPD1LQ8N335 351 aa21.91■■□□□ 1.1
CLN3-250ENST00000636839 CCDC150Q8NCX0 1101 aa21.91■■□□□ 1.1
CLN3-250ENST00000636839 MSTO1Q9BUK6 570 aa21.91■■□□□ 1.1
CLN3-250ENST00000636839 AGO2Q9UKV8 859 aaKnown RBP21.91■■□□□ 1.1
CLN3-250ENST00000636839 ABLIM1O14639 778 aa21.9■■□□□ 1.1
CLN3-250ENST00000636839 LRRN2O75325 713 aa21.9■■□□□ 1.1
CLN3-250ENST00000636839 GPR32O75388 356 aa21.9■■□□□ 1.1
CLN3-250ENST00000636839 TRIM21P19474 475 aaKnown RBP21.9■■□□□ 1.1
CLN3-250ENST00000636839 PRPF4BQ13523 1007 aaKnown RBP21.9■■□□□ 1.1
CLN3-250ENST00000636839 AMHR2Q16671 573 aa21.9■■□□□ 1.1
CLN3-250ENST00000636839 GDF6Q6KF10 455 aaPredicted RBP21.9■■□□□ 1.1
CLN3-250ENST00000636839 CPB2Q96IY4 423 aa21.9■■□□□ 1.1
CLN3-250ENST00000636839 TOPORSQ9NS56 1045 aaPredicted RBP21.9■■□□□ 1.1
CLN3-250ENST00000636839 SMIM35A0A1B0GVV1 85 aa21.9■■□□□ 1.1
CLN3-250ENST00000636839 ESPNB1AK53 854 aa21.9■■□□□ 1.1
CLN3-250ENST00000636839 NOL4O94818 638 aa21.9■■□□□ 1.1
CLN3-250ENST00000636839 KRT13P13646 458 aa21.9■■□□□ 1.1
CLN3-250ENST00000636839 ARHGEF6Q15052 776 aa21.9■■□□□ 1.1
CLN3-250ENST00000636839 FAM47CQ5HY64 1035 aa21.9■■□□□ 1.1
CLN3-250ENST00000636839 DPY19L2P1Q6NXN4 242 aa21.9■■□□□ 1.1
CLN3-250ENST00000636839 INTS8Q75QN2 995 aaKnown RBP21.9■■□□□ 1.1
CLN3-250ENST00000636839 TMEM139Q8IV31 216 aa21.9■■□□□ 1.1
CLN3-250ENST00000636839 WNT8BQ93098 351 aa21.9■■□□□ 1.1
CLN3-250ENST00000636839 TCHPQ9BT92 498 aa21.9■■□□□ 1.1
CLN3-250ENST00000636839 LSM14BQ9BX40 385 aaKnown RBP21.9■■□□□ 1.1
CLN3-250ENST00000636839 NFKBIZQ9BYH8 718 aa21.9■■□□□ 1.1
CLN3-250ENST00000636839 HMX1Q9NP08 348 aaPredicted RBP21.9■■□□□ 1.1
CLN3-250ENST00000636839 CLDN3O15551 220 aa21.89■■□□□ 1.1
CLN3-250ENST00000636839 ZEB2O60315 1214 aa21.89■■□□□ 1.1
CLN3-250ENST00000636839 SCP2P22307 547 aa21.89■■□□□ 1.1
CLN3-250ENST00000636839 TNFSF9P41273 254 aa21.89■■□□□ 1.1
CLN3-250ENST00000636839 GCLMP48507 274 aa21.89■■□□□ 1.1
CLN3-250ENST00000636839 FMO5P49326 533 aa21.89■■□□□ 1.1
CLN3-250ENST00000636839 ZPBP2Q6X784 338 aa21.89■■□□□ 1.1
CLN3-250ENST00000636839 DNAJC5GQ8N7S2 189 aa21.89■■□□□ 1.1
CLN3-250ENST00000636839 MFSD14AQ96MC6 490 aa21.89■■□□□ 1.1
CLN3-250ENST00000636839 OSMRQ99650 979 aa21.89■■□□□ 1.1
CLN3-250ENST00000636839 SCN10AQ9Y5Y9 1956 aa21.89■■□□□ 1.09
CLN3-250ENST00000636839 EXTL3O43909 919 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms