RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 TRIM65Q6PJ69 517 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 MTHFD1LQ6UB35 978 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 CACNA2D4Q7Z3S7 1137 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 KSR1Q8IVT5 923 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 CCAR2Q8N163 923 aaKnown RBP11.51□□□□□ -0.57
CLN3-248ENST00000636355 TXLNBQ8N3L3 684 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 RNF149Q8NC42 400 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 TRIB2Q92519 343 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 BAP1Q92560 729 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 ERO1AQ96HE7 468 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 FAM81BQ96LP2 452 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 MFSD14AQ96MC6 490 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 GANQ9H2C0 597 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 MMRN2Q9H8L6 949 aa11.51□□□□□ -0.57
CLN3-248ENST00000636355 FAM207AQ9NSI2 230 aaPredicted RBP11.51□□□□□ -0.57
CLN3-248ENST00000636355 CITO14578 2027 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 SMIM35A0A1B0GVV1 85 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 SSU72P8A0A1W2PR75 194 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 ZNF233A6NK53 670 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 CCDC85CA6NKD9 419 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 ANKRD63C9JTQ0 380 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 ACKR2O00590 384 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 DYNC1LI2O43237 492 aaPredicted RBP11.5□□□□□ -0.57
CLN3-248ENST00000636355 AOC2O75106 756 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 ZC3H11AO75152 810 aaKnown RBP eCLIP11.5□□□□□ -0.57
CLN3-248ENST00000636355 IPO7O95373 1038 aaKnown RBP11.5□□□□□ -0.57
CLN3-248ENST00000636355 PROZP22891 400 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 KLRC1P26715 233 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 CYLC1P35663 651 aaPredicted RBP11.5□□□□□ -0.57
CLN3-248ENST00000636355 AP3M2P53677 418 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 PRKCZQ05513 592 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 MCL1Q07820 350 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 CYP24A1Q07973 514 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 KCNMA1Q12791 1236 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 MFSD10Q14728 455 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 PSMD6Q15008 389 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 E4F1Q66K89 784 aaPredicted RBP11.5□□□□□ -0.57
CLN3-248ENST00000636355 PDXDC1Q6P996 788 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 TSHZ1Q6ZSZ6 1077 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 APBB1IPQ7Z5R6 666 aaPredicted RBP11.5□□□□□ -0.57
CLN3-248ENST00000636355 SRGAP1Q7Z6B7 1085 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 LRRC71Q8N4P6 559 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 PXYLP1Q8TE99 480 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 PARD3BQ8TEW8 1205 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 LMBR1Q8WVP7 490 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 LSM14BQ9BX40 385 aaKnown RBP11.5□□□□□ -0.57
CLN3-248ENST00000636355 FZD8Q9H461 694 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 SUGCTQ9HAC7 445 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 TMEM8AQ9HCN3 771 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 RRAGDQ9NQL2 400 aaPredicted RBP11.5□□□□□ -0.57
CLN3-248ENST00000636355 SRRDQ9UH36 339 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 AGO2Q9UKV8 859 aaKnown RBP11.5□□□□□ -0.57
CLN3-248ENST00000636355 COQ4Q9Y3A0 265 aa11.5□□□□□ -0.57
CLN3-248ENST00000636355 BZW2Q9Y6E2 419 aaKnown RBP11.5□□□□□ -0.57
CLN3-248ENST00000636355 CLDN3O15551 220 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 GFPT2O94808 682 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 NOL4O94818 638 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 ADRB2P07550 413 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 SMIM10L2AP0DMW4 78 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 SMIM10L2BP0DMW5 78 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 RARBP10826 455 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 UCHL3P15374 230 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 PON1P27169 355 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 PSEN2P49810 448 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 CLCN3P51790 818 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 LBX1P52954 281 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 ADAM17P78536 824 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 PURAQ00577 322 aaKnown RBP11.49□□□□□ -0.57
CLN3-248ENST00000636355 MBTD1Q05BQ5 628 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 DRP2Q13474 957 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 SURF1Q15526 300 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 PTPN21Q16825 1174 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 KIAA0753Q2KHM9 967 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 EPC2Q52LR7 807 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 MAP3K21Q5TCX8 1036 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 KLHDC7AQ5VTJ3 777 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 KRT39Q6A163 491 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 MPZL3Q6UWV2 235 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 ZNF662Q6ZS27 426 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 RHPN2Q8IUC4 686 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 CBWD2Q8IUF1 395 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 BRSK2Q8IWQ3 736 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 METTL13Q8N6R0 699 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 CPLX3Q8WVH0 158 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 KAT2BQ92831 832 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 ACO2Q99798 780 aaKnown RBP11.49□□□□□ -0.57
CLN3-248ENST00000636355 IKZF4Q9H2S9 585 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 RNF186Q9NXI6 227 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 APEX2Q9UBZ4 518 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 TNFSF13BQ9Y275 285 aa11.49□□□□□ -0.57
CLN3-248ENST00000636355 PDCD11Q14690 1871 aaKnown RBP11.49□□□□□ -0.57
CLN3-248ENST00000636355 TISP43B9A030 160 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 EPHB6O15197 1021 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 OGTO15294 1046 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 CCDC172P0C7W6 258 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 KLK7P49862 253 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 POLR2FP61218 127 aaKnown RBP11.48□□□□□ -0.57
CLN3-248ENST00000636355 KRT83P78385 493 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 MAPK8IP2Q13387 824 aaPredicted RBP11.48□□□□□ -0.57
CLN3-248ENST00000636355 PRPF4BQ13523 1007 aaKnown RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms