RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 DISP1Q96F81 1524 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 SETBP1Q9Y6X0 1596 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 FKBP6O75344 327 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 E2F6O75461 281 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 PHKG2P15735 406 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 TPP2P29144 1249 aaPredicted RBP9.44□□□□□ -0.9
VCL-206ENST00000623461 R3HDM1Q15032 1099 aaKnown RBP9.44□□□□□ -0.9
VCL-206ENST00000623461 PROSER3Q2NL68 480 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 BARGINQ6ZT62 677 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 SIKE1Q9BRV8 207 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 INTS2Q9H0H0 1204 aaKnown RBP9.44□□□□□ -0.9
VCL-206ENST00000623461 CPDO75976 1380 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 IQCA1LA6NCM1 817 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 GOLGA8SH3BPF8 625 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 H3BRJ5 948 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 RIMBP2O15034 1052 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 PECAM1P16284 738 aaPredicted RBP9.44□□□□□ -0.9
VCL-206ENST00000623461 TBC1D10CQ8IV04 446 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 PIGSQ96S52 555 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 SLC26A4O43511 780 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 PSMA2P25787 234 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 TRIM65Q6PJ69 517 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 NSMFQ6X4W1 530 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 ENOSF1Q7L5Y1 443 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 ERICH1Q86X53 443 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 ZNF577Q9BSK1 485 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 ZNF446Q9NWS9 450 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 KIF20BQ96Q89 1820 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 QRICH2Q9H0J4 1663 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 PIK3R2O00459 728 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 HP1BP3Q5SSJ5 553 aaPredicted RBP9.44□□□□□ -0.9
VCL-206ENST00000623461 ERGIC2Q96RQ1 377 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 LIN7AO14910 233 aaPredicted RBP9.44□□□□□ -0.9
VCL-206ENST00000623461 SLC16A3O15427 465 aaKnown RBP9.44□□□□□ -0.9
VCL-206ENST00000623461 PAMP19021 973 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 TAP1Q03518 808 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 FUKQ8N0W3 1084 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 MDM1Q8TC05 714 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 DACH2Q96NX9 599 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 C7orf25Q9BPX7 421 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 SEL1LQ9UBV2 794 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 DTNAQ9Y4J8 743 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 ZHX2Q9Y6X8 837 aa9.44□□□□□ -0.9
VCL-206ENST00000623461 ATP9AO75110 1047 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 HSPA1AP0DMV8 641 aaKnown RBP9.43□□□□□ -0.9
VCL-206ENST00000623461 HSPA1BP0DMV9 641 aaKnown RBP9.43□□□□□ -0.9
VCL-206ENST00000623461 TARSP26639 723 aaKnown RBP9.43□□□□□ -0.9
VCL-206ENST00000623461 MRPL28Q13084 256 aaKnown RBP9.43□□□□□ -0.9
VCL-206ENST00000623461 STX3Q13277 289 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 HORMAD1Q86X24 394 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 HACE1Q8IYU2 909 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 AGPAT1Q99943 283 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 VIRMAQ69YN4 1812 aaKnown RBP9.43□□□□□ -0.9
VCL-206ENST00000623461 NEDD4P46934 1319 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 ADGRA3Q8IWK6 1321 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 SPAG6O75602 509 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 KRT7P08729 469 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 SERPINB8P50452 374 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 ROR2Q01974 943 aaKnown RBP9.43□□□□□ -0.9
VCL-206ENST00000623461 CHRNDQ07001 517 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 LRRC36Q1X8D7 754 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 LRRC8EQ6NSJ5 796 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 CCNYQ8ND76 341 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 OR9Q1Q8NGQ5 310 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 SLC35G2Q8TBE7 412 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 C1orf54Q8WWF1 131 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 SH3GL2Q99962 352 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 SLC5A4Q9NY91 659 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 ZNF219Q9P2Y4 722 aaPredicted RBP9.43□□□□□ -0.9
VCL-206ENST00000623461 UVRAGQ9P2Y5 699 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 WDR17Q8IZU2 1322 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 PTPN4P29074 926 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 GYG1P46976 350 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 SERPINB9P50453 376 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 SLC29A2Q14542 456 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 CROCCP3Q8IVE0 287 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 ANKS1AQ92625 1134 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 VPS39Q96JC1 886 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 GREM2Q9H772 168 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 MANSC1Q9H8J5 431 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 S100A5P33763 92 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 GRIN1Q05586 938 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 SLFN13Q68D06 897 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 PPP1R18Q6NYC8 613 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 SCG3Q8WXD2 468 aaKnown RBP9.43□□□□□ -0.9
VCL-206ENST00000623461 ATP6V1E2Q96A05 226 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 UBE4BO95155 1302 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 MAP3K15Q6ZN16 1313 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 PNMA6FA0A0J9YX94 578 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 A8MXQ7 604 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 NUP107P57740 925 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 ERVK-24P63145 666 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 MAP3K10Q02779 954 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 TRADDQ15628 312 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 TRIM60Q495X7 471 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 GPR141Q7Z602 305 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 SIX6OS1Q8N1H7 587 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 ZNF555Q8NEP9 628 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 PARVBQ9HBI1 364 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 PHTF1Q9UMS5 762 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms