RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 NRP2O60462 931 aa7.08□□□□□ -1.28
VPS29-212ENST00000621131 IPO13O94829 963 aaKnown RBP7.08□□□□□ -1.28
VPS29-212ENST00000621131 XPAP23025 273 aaPredicted RBP7.08□□□□□ -1.28
VPS29-212ENST00000621131 CASRP41180 1078 aa7.08□□□□□ -1.28
VPS29-212ENST00000621131 FAM214AQ32MH5 1076 aa7.08□□□□□ -1.28
VPS29-212ENST00000621131 RABL3Q5HYI8 236 aa7.08□□□□□ -1.28
VPS29-212ENST00000621131 ZNF627Q7L945 461 aa7.08□□□□□ -1.28
VPS29-212ENST00000621131 RASSF3Q86WH2 238 aa7.08□□□□□ -1.28
VPS29-212ENST00000621131 MSL3Q8N5Y2 521 aaKnown RBP7.08□□□□□ -1.28
VPS29-212ENST00000621131 MB21D1Q8N884 522 aa7.08□□□□□ -1.28
VPS29-212ENST00000621131 RSAD2Q8WXG1 361 aa7.08□□□□□ -1.28
VPS29-212ENST00000621131 CLIP3Q96DZ5 547 aa7.08□□□□□ -1.28
VPS29-212ENST00000621131 CHFRQ96EP1 664 aa7.08□□□□□ -1.28
VPS29-212ENST00000621131 EVLQ9UI08 416 aaPredicted RBP7.08□□□□□ -1.28
VPS29-212ENST00000621131 KCNG1Q9UIX4 513 aa7.08□□□□□ -1.28
VPS29-212ENST00000621131 GOLGA3Q08378 1498 aa7.08□□□□□ -1.28
VPS29-212ENST00000621131 SOGA1O94964 1423 aa7.08□□□□□ -1.28
VPS29-212ENST00000621131 LOC105371045A0A1W2PR82 267 aa7.07□□□□□ -1.28
VPS29-212ENST00000621131 CLEC2LP0C7M8 214 aa7.07□□□□□ -1.28
VPS29-212ENST00000621131 GNAT2P19087 354 aa7.07□□□□□ -1.28
VPS29-212ENST00000621131 MRPL49Q13405 166 aaKnown RBP7.07□□□□□ -1.28
VPS29-212ENST00000621131 TRIM25Q14258 630 aaKnown RBP7.07□□□□□ -1.28
VPS29-212ENST00000621131 DHCR24Q15392 516 aa7.07□□□□□ -1.28
VPS29-212ENST00000621131 DDB1Q16531 1140 aa7.07□□□□□ -1.28
VPS29-212ENST00000621131 ULK2Q8IYT8 1036 aa7.07□□□□□ -1.28
VPS29-212ENST00000621131 OR5M3Q8NGP4 307 aa7.07□□□□□ -1.28
VPS29-212ENST00000621131 PGBD4Q96DM1 585 aa7.07□□□□□ -1.28
VPS29-212ENST00000621131 IKZF4Q9H2S9 585 aa7.07□□□□□ -1.28
VPS29-212ENST00000621131 REXO2Q9Y3B8 237 aaKnown RBP7.07□□□□□ -1.28
VPS29-212ENST00000621131 NOC2LQ9Y3T9 749 aaKnown RBP7.07□□□□□ -1.28
VPS29-212ENST00000621131 KDM1AO60341 852 aa7.06□□□□□ -1.28
VPS29-212ENST00000621131 FAM20BO75063 409 aa7.06□□□□□ -1.28
VPS29-212ENST00000621131 RAB11FIP3O75154 756 aa7.06□□□□□ -1.28
VPS29-212ENST00000621131 ADH4P08319 380 aa7.06□□□□□ -1.28
VPS29-212ENST00000621131 MGAT5Q09328 741 aa7.06□□□□□ -1.28
VPS29-212ENST00000621131 PDCD1Q15116 288 aa7.06□□□□□ -1.28
VPS29-212ENST00000621131 UBE3CQ15386 1083 aa7.06□□□□□ -1.28
VPS29-212ENST00000621131 ATP13A4Q4VNC1 1196 aa7.06□□□□□ -1.28
VPS29-212ENST00000621131 DCAF17Q5H9S7 520 aaPredicted RBP7.06□□□□□ -1.28
VPS29-212ENST00000621131 Q6ZPA2 131 aa7.06□□□□□ -1.28
VPS29-212ENST00000621131 RNF180Q86T96 592 aa7.06□□□□□ -1.28
VPS29-212ENST00000621131 LDLRAD3Q86YD5 345 aa7.06□□□□□ -1.28
VPS29-212ENST00000621131 PDCD2LQ9BRP1 358 aa7.06□□□□□ -1.28
VPS29-212ENST00000621131 KIF27Q86VH2 1401 aa7.06□□□□□ -1.28
VPS29-212ENST00000621131 FGD5Q6ZNL6 1462 aa7.05□□□□□ -1.28
VPS29-212ENST00000621131 RPS6KA4O75676 772 aa7.05□□□□□ -1.28
VPS29-212ENST00000621131 HK1P19367 917 aa7.05□□□□□ -1.28
VPS29-212ENST00000621131 NRG3P56975 720 aa7.05□□□□□ -1.28
VPS29-212ENST00000621131 PPARAQ07869 468 aa7.05□□□□□ -1.28
VPS29-212ENST00000621131 PITRM1Q5JRX3 1037 aa7.05□□□□□ -1.28
VPS29-212ENST00000621131 METTL24Q5JXM2 366 aa7.05□□□□□ -1.28
VPS29-212ENST00000621131 LMBR1LQ6UX01 489 aa7.05□□□□□ -1.28
VPS29-212ENST00000621131 THNSL2Q86YJ6 484 aa7.05□□□□□ -1.28
VPS29-212ENST00000621131 CEP89Q96ST8 783 aa7.05□□□□□ -1.28
VPS29-212ENST00000621131 CPPED1Q9BRF8 314 aaPredicted RBP7.05□□□□□ -1.28
VPS29-212ENST00000621131 LSM14BQ9BX40 385 aaKnown RBP7.05□□□□□ -1.28
VPS29-212ENST00000621131 TOPBP1Q92547 1522 aa7.05□□□□□ -1.28
VPS29-212ENST00000621131 LMTK3Q96Q04 1460 aa7.04□□□□□ -1.28
VPS29-212ENST00000621131 WDR33Q9C0J8 1336 aaKnown RBP7.04□□□□□ -1.28
VPS29-212ENST00000621131 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.04□□□□□ -1.28
VPS29-212ENST00000621131 TLDC2A0PJX2 215 aa7.04□□□□□ -1.28
VPS29-212ENST00000621131 NEMP1O14524 444 aa7.04□□□□□ -1.28
VPS29-212ENST00000621131 LTA4HP09960 611 aaKnown RBP7.04□□□□□ -1.28
VPS29-212ENST00000621131 KRT4P19013 534 aa7.04□□□□□ -1.28
VPS29-212ENST00000621131 NR4A1P22736 598 aa7.04□□□□□ -1.28
VPS29-212ENST00000621131 ID4P47928 161 aa7.04□□□□□ -1.28
VPS29-212ENST00000621131 PTTG1IPP53801 180 aa7.04□□□□□ -1.28
VPS29-212ENST00000621131 INHBCP55103 352 aa7.04□□□□□ -1.28
VPS29-212ENST00000621131 WNT3AP56704 352 aa7.04□□□□□ -1.28
VPS29-212ENST00000621131 PURAQ00577 322 aaKnown RBP7.04□□□□□ -1.28
VPS29-212ENST00000621131 CCDC62Q6P9F0 684 aa7.04□□□□□ -1.28
VPS29-212ENST00000621131 DDX46Q7L014 1031 aaKnown RBP7.04□□□□□ -1.28
VPS29-212ENST00000621131 MRGPREQ86SM8 312 aa7.04□□□□□ -1.28
VPS29-212ENST00000621131 FAM83AQ86UY5 434 aa7.04□□□□□ -1.28
VPS29-212ENST00000621131 OR14C36Q8NHC7 312 aa7.04□□□□□ -1.28
VPS29-212ENST00000621131 FBXO41Q8TF61 875 aa7.04□□□□□ -1.28
VPS29-212ENST00000621131 USP7Q93009 1102 aa7.04□□□□□ -1.28
VPS29-212ENST00000621131 IL17RAQ96F46 866 aa7.04□□□□□ -1.28
VPS29-212ENST00000621131 ERICH3Q5RHP9 1530 aa7.03□□□□□ -1.28
VPS29-212ENST00000621131 ZEB2O60315 1214 aa7.03□□□□□ -1.28
VPS29-212ENST00000621131 DNAJC6O75061 913 aa7.03□□□□□ -1.28
VPS29-212ENST00000621131 GZMKP49863 264 aa7.03□□□□□ -1.28
VPS29-212ENST00000621131 DUSP2Q05923 314 aa7.03□□□□□ -1.28
VPS29-212ENST00000621131 C19orf54Q5BKX5 351 aa7.03□□□□□ -1.28
VPS29-212ENST00000621131 CT83Q5H943 113 aa7.03□□□□□ -1.28
VPS29-212ENST00000621131 CRB2Q5IJ48 1285 aa7.03□□□□□ -1.28
VPS29-212ENST00000621131 ABHD15Q6UXT9 468 aa7.03□□□□□ -1.28
VPS29-212ENST00000621131 RHOUQ7L0Q8 258 aa7.03□□□□□ -1.28
VPS29-212ENST00000621131 GLB1L2Q8IW92 636 aa7.03□□□□□ -1.28
VPS29-212ENST00000621131 OR52N2Q8NGI0 321 aa7.03□□□□□ -1.28
VPS29-212ENST00000621131 SLC25A43Q8WUT9 341 aaPredicted RBP7.03□□□□□ -1.28
VPS29-212ENST00000621131 HAS1Q92839 578 aa7.03□□□□□ -1.28
VPS29-212ENST00000621131 CPEB1Q9BZB8 566 aaKnown RBP7.03□□□□□ -1.28
VPS29-212ENST00000621131 NRDE2Q9H7Z3 1164 aa7.03□□□□□ -1.28
VPS29-212ENST00000621131 TOPORSQ9NS56 1045 aaPredicted RBP7.03□□□□□ -1.28
VPS29-212ENST00000621131 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.03□□□□□ -1.28
VPS29-212ENST00000621131 CDY2AQ9Y6F7 541 aa7.03□□□□□ -1.28
VPS29-212ENST00000621131 KIF13AQ9H1H9 1805 aa7.03□□□□□ -1.28
VPS29-212ENST00000621131 TMEM127O75204 238 aa7.02□□□□□ -1.29
VPS29-212ENST00000621131 LPLP06858 475 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms