RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 HOXA13P31271 388 aaPredicted RBP14.12□□□□□ -0.15
MSH6-214ENST00000616033 POU5F1Q01860 360 aaKnown RBP14.12□□□□□ -0.15
MSH6-214ENST00000616033 PDIA5Q14554 519 aa14.12□□□□□ -0.15
MSH6-214ENST00000616033 SETDB1Q15047 1291 aa14.12□□□□□ -0.15
MSH6-214ENST00000616033 EPC2Q52LR7 807 aa14.12□□□□□ -0.15
MSH6-214ENST00000616033 TMEM154Q6P9G4 183 aa14.12□□□□□ -0.15
MSH6-214ENST00000616033 MAB21L3Q8N8X9 362 aa14.12□□□□□ -0.15
MSH6-214ENST00000616033 CYP2W1Q8TAV3 490 aa14.12□□□□□ -0.15
MSH6-214ENST00000616033 CCHCR1Q8TD31 782 aa14.12□□□□□ -0.15
MSH6-214ENST00000616033 MYLK2Q9H1R3 596 aa14.12□□□□□ -0.15
MSH6-214ENST00000616033 BATF3Q9NR55 127 aa14.12□□□□□ -0.15
MSH6-214ENST00000616033 LINGO3P0C6S8 592 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 AKR1B1P15121 316 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 ATP4AP20648 1035 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 TRAF1Q13077 416 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 TBC1D9BQ66K14 1250 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 APBB1IPQ7Z5R6 666 aaPredicted RBP14.11□□□□□ -0.15
MSH6-214ENST00000616033 AMIGO3Q86WK7 504 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 SUPT20HQ8NEM7 779 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 KAT5Q92993 513 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 LZTS2Q9BRK4 669 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 STMN4Q9H169 189 aaPredicted RBP14.11□□□□□ -0.15
MSH6-214ENST00000616033 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.11□□□□□ -0.15
MSH6-214ENST00000616033 LRRD1A4D1F6 860 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 PHF2O75151 1096 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 NEFHP12036 1026 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 GBP1P32455 592 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 RFC5P40937 340 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 RAB27AP51159 221 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 KRT17Q04695 432 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 RNF220Q5VTB9 566 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 HHATQ5VTY9 493 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 CRELD2Q6UXH1 353 aaPredicted RBP14.11□□□□□ -0.15
MSH6-214ENST00000616033 ECHDC2Q86YB7 292 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 RPS6KC1Q96S38 1066 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 USH1CQ9Y6N9 552 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 TISP43B9A030 160 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 EXOC3O60645 756 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 PPP1R11O60927 126 aaPredicted RBP14.11□□□□□ -0.15
MSH6-214ENST00000616033 RPL13P26373 211 aaKnown RBP14.11□□□□□ -0.15
MSH6-214ENST00000616033 HOXD13P35453 343 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 MGAT5Q09328 741 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 GIT2Q14161 759 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 CENPTQ96BT3 561 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 SIX2Q9NPC8 291 aa14.11□□□□□ -0.15
MSH6-214ENST00000616033 COL4A1P02462 1669 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 RASA4BC9J798 803 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 RASA4O43374 803 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 NUDT17P0C025 328 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 KRT15P19012 456 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 LMNB1P20700 586 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 BNIP1Q12981 228 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 SGO2Q562F6 1265 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 COL23A1Q86Y22 540 aaPredicted RBP14.1□□□□□ -0.15
MSH6-214ENST00000616033 FAM84AQ96KN4 292 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 TRIM4Q9C037 500 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 JMJD4Q9H9V9 463 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 ZNF287Q9HBT7 754 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 PAPOLBQ9NRJ5 636 aaKnown RBP14.1□□□□□ -0.15
MSH6-214ENST00000616033 CCNL1Q9UK58 526 aaPredicted RBP14.1□□□□□ -0.15
MSH6-214ENST00000616033 TTC7AQ9ULT0 858 aaPredicted RBP14.1□□□□□ -0.15
MSH6-214ENST00000616033 ZNF652Q9Y2D9 606 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 TNS2Q63HR2 1409 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 PARP4Q9UKK3 1724 aaKnown RBP14.1□□□□□ -0.15
MSH6-214ENST00000616033 OVGP1Q12889 678 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 RNF207Q6ZRF8 634 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 LMNTD2Q8IXW0 634 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 CARD9Q9H257 536 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 MTUS1Q9ULD2 1270 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 PCDHA1Q9Y5I3 950 aa14.1□□□□□ -0.15
MSH6-214ENST00000616033 DDX39AO00148 427 aaKnown RBP14.09□□□□□ -0.15
MSH6-214ENST00000616033 GCLMP48507 274 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 NFIXQ14938 502 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 VSTM1Q6UX27 236 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 GSTA5Q7RTV2 222 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 C12orf65Q9H3J6 166 aaKnown RBP14.09□□□□□ -0.15
MSH6-214ENST00000616033 PCDHA2Q9Y5H9 948 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 SLIT2O94813 1529 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 PASKQ96RG2 1323 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 COBLL1Q53SF7 1204 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 FRMD5Q7Z6J6 570 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 SLFN11Q7Z7L1 901 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 TEKT4Q8WW24 435 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 EZH1Q92800 747 aaPredicted RBP14.09□□□□□ -0.15
MSH6-214ENST00000616033 DDX50Q9BQ39 737 aaKnown RBP14.09□□□□□ -0.15
MSH6-214ENST00000616033 KIAA1683Q9H0B3 1180 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 LMCD1Q9NZU5 365 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 CCDC88AQ3V6T2 1871 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 FAM187AA6NFU0 413 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 VCAM1P19320 739 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 DHX34Q14147 1143 aaKnown RBP14.09□□□□□ -0.15
MSH6-214ENST00000616033 SHROOM1Q2M3G4 852 aaPredicted RBP14.09□□□□□ -0.15
MSH6-214ENST00000616033 LLGL2Q6P1M3 1020 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 ZC3H18Q86VM9 953 aaKnown RBP14.09□□□□□ -0.15
MSH6-214ENST00000616033 PPM1KQ8N3J5 372 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 UCMAQ8WVF2 138 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 ZBTB21Q9ULJ3 1066 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 USTQ9Y2C2 406 aa14.09□□□□□ -0.15
MSH6-214ENST00000616033 ROBO1Q9Y6N7 1651 aa14.08□□□□□ -0.15
MSH6-214ENST00000616033 GOLGA8IPA6NC78 632 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms