RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 RWDD2AQ9UIY3 292 aa16.1■□□□□ 0.17
CD48-203ENST00000613788 TRAF3IP3Q9Y228 551 aa16.1■□□□□ 0.17
CD48-203ENST00000613788 PIN4Q9Y237 131 aaKnown RBP16.1■□□□□ 0.17
CD48-203ENST00000613788 NR2E3Q9Y5X4 410 aa16.1■□□□□ 0.17
CD48-203ENST00000613788 CLDN3O15551 220 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 TGFB1I1O43294 461 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 CXCL10P02778 98 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 ITGB8P26012 769 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 MATR3P43243 847 aaKnown RBP eCLIP16.09■□□□□ 0.17
CD48-203ENST00000613788 LRRC63Q05C16 580 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 GPNMBQ14956 572 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 ANO6Q4KMQ2 910 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 PLEKHG4Q58EX7 1191 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 FOXR2Q6PJQ5 311 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 RPUSD2Q8IZ73 545 aaKnown RBP16.09■□□□□ 0.17
CD48-203ENST00000613788 CCDC51Q96ER9 411 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 CPB2Q96IY4 423 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 ADPGKQ9BRR6 497 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 FTHL17Q9BXU8 183 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 OSBPL7Q9BZF2 842 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 DNAJC25Q9H1X3 360 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 SEMA6BQ9H3T3 888 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 CTNND2Q9UQB3 1225 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 USP20Q9Y2K6 914 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 ZMYM2Q9UBW7 1377 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 TTLL13PA6NNM8 815 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 ANKRD63C9JTQ0 380 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 EDN1P05305 212 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 GARTP22102 1010 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 RPL13P26373 211 aaKnown RBP16.09■□□□□ 0.17
CD48-203ENST00000613788 EDRF1Q3B7T1 1238 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 SLC27A1Q6PCB7 646 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 POMGNT1Q8WZA1 660 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 AGPAT3Q9NRZ7 376 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 STYXL1Q9Y6J8 313 aa16.09■□□□□ 0.17
CD48-203ENST00000613788 KIAA0391O15091 583 aaKnown RBP16.08■□□□□ 0.16
CD48-203ENST00000613788 PFKMP08237 780 aa16.08■□□□□ 0.16
CD48-203ENST00000613788 MYBPC2Q14324 1141 aa16.08■□□□□ 0.16
CD48-203ENST00000613788 HSP90AA2PQ14568 343 aaPredicted RBP16.08■□□□□ 0.16
CD48-203ENST00000613788 ZCWPW2Q504Y3 356 aa16.08■□□□□ 0.16
CD48-203ENST00000613788 ANKRD40Q6AI12 368 aa16.08■□□□□ 0.16
CD48-203ENST00000613788 ARMCX5Q6P1M9 558 aa16.08■□□□□ 0.16
CD48-203ENST00000613788 SLC39A4Q6P5W5 647 aa16.08■□□□□ 0.16
CD48-203ENST00000613788 MPZL3Q6UWV2 235 aa16.08■□□□□ 0.16
CD48-203ENST00000613788 C11orf57Q6ZUT1 292 aaPredicted RBP16.08■□□□□ 0.16
CD48-203ENST00000613788 DEFB128Q7Z7B8 93 aa16.08■□□□□ 0.16
CD48-203ENST00000613788 C12orf56Q8IXR9 622 aa16.08■□□□□ 0.16
CD48-203ENST00000613788 DBF4BQ8NFT6 615 aa16.08■□□□□ 0.16
CD48-203ENST00000613788 IKZF4Q9H2S9 585 aa16.08■□□□□ 0.16
CD48-203ENST00000613788 TSPY26PQ9H489 355 aa16.08■□□□□ 0.16
CD48-203ENST00000613788 PDZD7Q9H5P4 517 aa16.08■□□□□ 0.16
CD48-203ENST00000613788 PTPRHQ9HD43 1115 aa16.08■□□□□ 0.16
CD48-203ENST00000613788 ANKFY1Q9P2R3 1169 aa16.08■□□□□ 0.16
CD48-203ENST00000613788 CLIC2O15247 247 aa16.07■□□□□ 0.16
CD48-203ENST00000613788 CSF2RAP15509 400 aa16.07■□□□□ 0.16
CD48-203ENST00000613788 PROZP22891 400 aa16.07■□□□□ 0.16
CD48-203ENST00000613788 ZNF165P49910 485 aa16.07■□□□□ 0.16
CD48-203ENST00000613788 STX17P56962 302 aa16.07■□□□□ 0.16
CD48-203ENST00000613788 FKBP3Q00688 224 aaKnown RBP16.07■□□□□ 0.16
CD48-203ENST00000613788 MCL1Q07820 350 aa16.07■□□□□ 0.16
CD48-203ENST00000613788 PPIGQ13427 754 aaKnown RBP eCLIP16.07■□□□□ 0.16
CD48-203ENST00000613788 NFIL3Q16649 462 aa16.07■□□□□ 0.16
CD48-203ENST00000613788 DCAF4L1Q3SXM0 396 aa16.07■□□□□ 0.16
CD48-203ENST00000613788 ZNF568Q3ZCX4 644 aa16.07■□□□□ 0.16
CD48-203ENST00000613788 EEF1DP3Q658K8 133 aa16.07■□□□□ 0.16
CD48-203ENST00000613788 TWF2Q6IBS0 349 aaKnown RBP16.07■□□□□ 0.16
CD48-203ENST00000613788 TMEM174Q8WUU8 243 aa16.07■□□□□ 0.16
CD48-203ENST00000613788 ZBTB45Q96K62 511 aaPredicted RBP16.07■□□□□ 0.16
CD48-203ENST00000613788 BPIFA3Q9BQP9 254 aa16.07■□□□□ 0.16
CD48-203ENST00000613788 TRIM6Q9C030 488 aaPredicted RBP16.07■□□□□ 0.16
CD48-203ENST00000613788 TMX1Q9H3N1 280 aa16.07■□□□□ 0.16
CD48-203ENST00000613788 A0A0B4J269 797 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 TRIM49BA6NDI0 452 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 TISP43B9A030 160 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 FGFR1OPO95684 399 aaKnown RBP16.06■□□□□ 0.16
CD48-203ENST00000613788 LDHAP00338 332 aaKnown RBP16.06■□□□□ 0.16
CD48-203ENST00000613788 NR3C1P04150 777 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 MCF2P10911 925 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 SYN1P17600 705 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 ADSSP30520 456 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 PMS1P54277 932 aaKnown RBP16.06■□□□□ 0.16
CD48-203ENST00000613788 FPGSQ05932 587 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 IKBKEQ14164 716 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 DSC3Q14574 896 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 NOLC1Q14978 699 aaKnown RBP eCLIP16.06■□□□□ 0.16
CD48-203ENST00000613788 TPD52L1Q16890 204 aaPredicted RBP16.06■□□□□ 0.16
CD48-203ENST00000613788 TTI2Q6NXR4 508 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 CNKSR3Q6P9H4 555 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 ZBTB33Q86T24 672 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 CDR2LQ86X02 465 aaPredicted RBP16.06■□□□□ 0.16
CD48-203ENST00000613788 SLC9A9Q8IVB4 645 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 ENOX1Q8TC92 643 aaKnown RBP16.06■□□□□ 0.16
CD48-203ENST00000613788 BADQ92934 168 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 ADAM2Q99965 735 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 LBHD1Q9BQE6 289 aaPredicted RBP16.06■□□□□ 0.16
CD48-203ENST00000613788 MSTO1Q9BUK6 570 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 TRAIPQ9BWF2 469 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 KIAA1586Q9HCI6 787 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 IL23AQ9NPF7 189 aa16.06■□□□□ 0.16
CD48-203ENST00000613788 AGO2Q9UKV8 859 aaKnown RBP16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms