RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 FAM187BQ17R55 369 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 DCAF17Q5H9S7 520 aaPredicted RBP15.56■□□□□ 0.08
USP39-220ENST00000613444 LHX8Q68G74 356 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 DPY19L2P1Q6NXN4 242 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 INTS8Q75QN2 995 aaKnown RBP15.56■□□□□ 0.08
USP39-220ENST00000613444 MAP7D2Q96T17 732 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 ACO2Q99798 780 aaKnown RBP15.56■□□□□ 0.08
USP39-220ENST00000613444 MRPL4Q9BYD3 311 aaKnown RBP15.56■□□□□ 0.08
USP39-220ENST00000613444 ADAMTS10Q9H324 1103 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 TMX1Q9H3N1 280 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 ZEB2O60315 1214 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 GPR32O75388 356 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 CYP2C9P11712 490 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 PROZP22891 400 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 SFPQP23246 707 aaKnown RBP eCLIP15.56■□□□□ 0.08
USP39-220ENST00000613444 CASP14P31944 242 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 NLRP11P59045 1033 aaKnown RBP15.56■□□□□ 0.08
USP39-220ENST00000613444 DLG4P78352 724 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 NBPF20Q3BBV1 942 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 FIGNQ5HY92 759 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 C7orf31Q8N865 590 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 MFSD14AQ96MC6 490 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 PPP1R16BQ96T49 567 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 BEGAINQ9BUH8 593 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 PTPRHQ9HD43 1115 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 ANK1P16157 1881 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 TTC26A0AVF1 554 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 C17orf102A2RUQ5 167 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 INO80B-WBP1J3KQ70 363 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 EPHB6O15197 1021 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 B4GALT5O43286 388 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 FAM189A1O60320 539 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 MFAP3LO75121 409 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 TRIM49P0CI25 452 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 TRIM49CP0CI26 452 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 PHKA2P46019 1235 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 TRIM14Q14142 442 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 TCERG1LQ5VWI1 586 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 SLFN12LQ6IEE8 588 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 CRELD2Q6UXH1 353 aaPredicted RBP15.55■□□□□ 0.08
USP39-220ENST00000613444 ZNF410Q86VK4 478 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 ZSCAN30Q86W11 494 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 TMEM139Q8IV31 216 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 GPD1LQ8N335 351 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 DNAJC5GQ8N7S2 189 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 INO80BQ9C086 356 aaPredicted RBP15.55■□□□□ 0.08
USP39-220ENST00000613444 FAM49AQ9H0Q0 323 aaPredicted RBP15.55■□□□□ 0.08
USP39-220ENST00000613444 GTF2IRD1Q9UHL9 959 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 GRIN2DO15399 1336 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 AKR1B15C9JRZ8 316 aaPredicted RBP15.55■□□□□ 0.08
USP39-220ENST00000613444 EXTL3O43909 919 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 CSDE1O75534 798 aaKnown RBP15.55■□□□□ 0.08
USP39-220ENST00000613444 TOM1L1O75674 476 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 TSHZ1Q6ZSZ6 1077 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 PPFIBP1Q86W92 1011 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 CPLX3Q8WVH0 158 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 AGO2Q9UKV8 859 aaKnown RBP15.55■□□□□ 0.08
USP39-220ENST00000613444 CAPN11Q9UMQ6 739 aa15.55■□□□□ 0.08
USP39-220ENST00000613444 KIAA0391O15091 583 aaKnown RBP15.54■□□□□ 0.08
USP39-220ENST00000613444 NOL4O94818 638 aa15.54■□□□□ 0.08
USP39-220ENST00000613444 FMO5P49326 533 aa15.54■□□□□ 0.08
USP39-220ENST00000613444 VAMP7P51809 220 aa15.54■□□□□ 0.08
USP39-220ENST00000613444 CBWD6Q4V339 395 aa15.54■□□□□ 0.08
USP39-220ENST00000613444 CBWD3Q5JTY5 395 aa15.54■□□□□ 0.08
USP39-220ENST00000613444 CBWD5Q5RIA9 395 aa15.54■□□□□ 0.08
USP39-220ENST00000613444 DNAJB3Q8WWF6 145 aa15.54■□□□□ 0.08
USP39-220ENST00000613444 FAM213AQ9BRX8 229 aa15.54■□□□□ 0.08
USP39-220ENST00000613444 CRACR2AQ9BSW2 395 aa15.54■□□□□ 0.08
USP39-220ENST00000613444 NUP58Q9BVL2 599 aa15.54■□□□□ 0.08
USP39-220ENST00000613444 CDHR5Q9HBB8 845 aa15.54■□□□□ 0.08
USP39-220ENST00000613444 HMX1Q9NP08 348 aaPredicted RBP15.54■□□□□ 0.08
USP39-220ENST00000613444 PRMT7Q9NVM4 692 aaPredicted RBP15.54■□□□□ 0.08
USP39-220ENST00000613444 ANKFY1Q9P2R3 1169 aa15.54■□□□□ 0.08
USP39-220ENST00000613444 PYCARDQ9ULZ3 195 aa15.54■□□□□ 0.08
USP39-220ENST00000613444 GTPBP10A4D1E9 387 aaKnown RBP15.53■□□□□ 0.08
USP39-220ENST00000613444 GNAT1P11488 350 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 MCL1Q07820 350 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 CYP24A1Q07973 514 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 PPP3CAQ08209 521 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 TMEM62Q0P6H9 643 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 PRPF4BQ13523 1007 aaKnown RBP15.53■□□□□ 0.08
USP39-220ENST00000613444 KIZQ2M2Z5 673 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 ZBTB41Q5SVQ8 909 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 GDF6Q6KF10 455 aaPredicted RBP15.53■□□□□ 0.08
USP39-220ENST00000613444 SESTD1Q86VW0 696 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 PCSK9Q8NBP7 692 aaKnown RBP15.53■□□□□ 0.08
USP39-220ENST00000613444 PARD3BQ8TEW8 1205 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 SH3TC2Q8TF17 1288 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 NLRP7Q8WX94 980 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 AGPAT5Q9NUQ2 364 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 PTPN22Q9Y2R2 807 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 CNTNAP2Q9UHC6 1331 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 A0A1W2PQJ5 194 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 CLDN3O15551 220 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 KRT13P13646 458 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 CDC42EP1Q00587 391 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 ENPEPQ07075 957 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 SRGAP1Q7Z6B7 1085 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 RNF180Q86T96 592 aa15.53■□□□□ 0.08
USP39-220ENST00000613444 PRIMPOLQ96LW4 560 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms