RNA–Protein interactions for RNA: ENST00000612050.4

CBWD3-208, Transcript of COBW domain containing 3, humanhuman

TSL 1 (best)

Gene CBWD3, Length 1,440 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-208ENST00000612050 TMEM175Q9BSA9 504 aa13.59□□□□□ -0.23
CBWD3-208ENST00000612050 RNF19AQ9NV58 838 aa13.59□□□□□ -0.23
CBWD3-208ENST00000612050 TBC1D13Q9NVG8 400 aa13.59□□□□□ -0.23
CBWD3-208ENST00000612050 PARP2Q9UGN5 583 aa13.59□□□□□ -0.23
CBWD3-208ENST00000612050 A0A1B0GUA9 196 aa13.58□□□□□ -0.24
CBWD3-208ENST00000612050 HIP1RO75146 1068 aa13.58□□□□□ -0.24
CBWD3-208ENST00000612050 PLA2G4BP0C869 781 aa13.58□□□□□ -0.24
CBWD3-208ENST00000612050 SCP2P22307 547 aa13.58□□□□□ -0.24
CBWD3-208ENST00000612050 GUCY2CP25092 1073 aa13.58□□□□□ -0.24
CBWD3-208ENST00000612050 STK38Q15208 465 aa13.58□□□□□ -0.24
CBWD3-208ENST00000612050 RINT1Q6NUQ1 792 aa13.58□□□□□ -0.24
CBWD3-208ENST00000612050 AGMOQ6ZNB7 445 aa13.58□□□□□ -0.24
CBWD3-208ENST00000612050 LRRC55Q6ZSA7 311 aa13.58□□□□□ -0.24
CBWD3-208ENST00000612050 ADAMTS19Q8TE59 1207 aa13.58□□□□□ -0.24
CBWD3-208ENST00000612050 UHRF1Q96T88 793 aaPredicted RBP13.58□□□□□ -0.24
CBWD3-208ENST00000612050 COL25A1Q9BXS0 654 aaPredicted RBP13.58□□□□□ -0.24
CBWD3-208ENST00000612050 EIF2AQ9BY44 585 aaKnown RBP13.58□□□□□ -0.24
CBWD3-208ENST00000612050 FZD8Q9H461 694 aa13.58□□□□□ -0.24
CBWD3-208ENST00000612050 FAN1Q9Y2M0 1017 aa13.58□□□□□ -0.24
CBWD3-208ENST00000612050 ZMYM2Q9UBW7 1377 aa13.58□□□□□ -0.24
CBWD3-208ENST00000612050 MYH11P35749 1972 aa13.58□□□□□ -0.24
CBWD3-208ENST00000612050 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.57□□□□□ -0.24
CBWD3-208ENST00000612050 TBCAO75347 108 aaKnown RBP13.57□□□□□ -0.24
CBWD3-208ENST00000612050 POMCP01189 267 aa13.57□□□□□ -0.24
CBWD3-208ENST00000612050 MLH1P40692 756 aa13.57□□□□□ -0.24
CBWD3-208ENST00000612050 NRIP1P48552 1158 aa13.57□□□□□ -0.24
CBWD3-208ENST00000612050 YARSP54577 528 aaKnown RBP13.57□□□□□ -0.24
CBWD3-208ENST00000612050 CEBPZQ03701 1054 aaKnown RBP13.57□□□□□ -0.24
CBWD3-208ENST00000612050 RESTQ13127 1097 aa13.57□□□□□ -0.24
CBWD3-208ENST00000612050 AMHR2Q16671 573 aa13.57□□□□□ -0.24
CBWD3-208ENST00000612050 LEXMQ3ZCV2 418 aa13.57□□□□□ -0.24
CBWD3-208ENST00000612050 UBXN11Q5T124 520 aa13.57□□□□□ -0.24
CBWD3-208ENST00000612050 PLPP4Q5VZY2 271 aa13.57□□□□□ -0.24
CBWD3-208ENST00000612050 RBM23Q86U06 439 aaKnown RBP13.57□□□□□ -0.24
CBWD3-208ENST00000612050 SLC39A11Q8N1S5 342 aa13.57□□□□□ -0.24
CBWD3-208ENST00000612050 TCHPQ9BT92 498 aa13.57□□□□□ -0.24
CBWD3-208ENST00000612050 MMTAG2Q9BU76 263 aaKnown RBP13.57□□□□□ -0.24
CBWD3-208ENST00000612050 MRPL4Q9BYD3 311 aaKnown RBP13.57□□□□□ -0.24
CBWD3-208ENST00000612050 TMEM134Q9H6X4 195 aa13.57□□□□□ -0.24
CBWD3-208ENST00000612050 NRDE2Q9H7Z3 1164 aa13.57□□□□□ -0.24
CBWD3-208ENST00000612050 ODF2LQ9ULJ1 636 aa13.57□□□□□ -0.24
CBWD3-208ENST00000612050 MTMR6Q9Y217 621 aa13.57□□□□□ -0.24
CBWD3-208ENST00000612050 SSX2IPQ9Y2D8 614 aa13.57□□□□□ -0.24
CBWD3-208ENST00000612050 CHD7Q9P2D1 2997 aa13.57□□□□□ -0.24
CBWD3-208ENST00000612050 TDRD15B5MCY1 1934 aaKnown RBP13.57□□□□□ -0.24
CBWD3-208ENST00000612050 ARL5CA6NH57 179 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 B4GALT5O43286 388 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 FAM13AO94988 1023 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 PLS3P13797 630 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 OR1G1P47890 313 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 NPTX2P47972 431 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 KCNQ1P51787 676 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 HYAL1Q12794 435 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 GRIK3Q13003 919 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 DHX8Q14562 1220 aaKnown RBP13.56□□□□□ -0.24
CBWD3-208ENST00000612050 TMEM119Q4V9L6 283 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 ATF7IP2Q5U623 682 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 C1orf186Q6ZWK4 172 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 EFHBQ8N7U6 833 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 KRI1Q8N9T8 703 aaKnown RBP13.56□□□□□ -0.24
CBWD3-208ENST00000612050 SMG8Q8ND04 991 aaKnown RBP13.56□□□□□ -0.24
CBWD3-208ENST00000612050 BSNDQ8WZ55 320 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 PNMA5Q96PV4 448 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 GAD1Q99259 594 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 RUSC1Q9BVN2 902 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 COLEC11Q9BWP8 271 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 CCSER1Q9C0I3 900 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 NXF3Q9H4D5 531 aaKnown RBP13.56□□□□□ -0.24
CBWD3-208ENST00000612050 TOPORSQ9NS56 1045 aaPredicted RBP13.56□□□□□ -0.24
CBWD3-208ENST00000612050 HCSTQ9UBK5 93 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 STK17AQ9UEE5 414 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 SRPRBQ9Y5M8 271 aaKnown RBP13.56□□□□□ -0.24
CBWD3-208ENST00000612050 CLIC4Q9Y696 253 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 NT5C1B-RDH14C9J2C7 533 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 GALTP07902 379 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 DNAJB1P25685 340 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 MARCKSP29966 332 aaPredicted RBP13.56□□□□□ -0.24
CBWD3-208ENST00000612050 PBX3P40426 434 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 MATR3P43243 847 aaKnown RBP eCLIP13.56□□□□□ -0.24
CBWD3-208ENST00000612050 RAD51AP2Q09MP3 1159 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 PTCRAQ6ISU1 281 aaPredicted RBP13.56□□□□□ -0.24
CBWD3-208ENST00000612050 ELMSAN1Q6PJG2 1045 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 CCDC73Q6ZRK6 1079 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 DDX53Q86TM3 631 aaKnown RBP13.56□□□□□ -0.24
CBWD3-208ENST00000612050 GPBP1Q86WP2 473 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 CDR2LQ86X02 465 aaPredicted RBP13.56□□□□□ -0.24
CBWD3-208ENST00000612050 LARP4BQ92615 738 aaKnown RBP13.56□□□□□ -0.24
CBWD3-208ENST00000612050 BICD1Q96G01 975 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 IGSF21Q96ID5 467 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 KIFC3Q9BVG8 833 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 CCDC94Q9BW85 323 aaPredicted RBP13.56□□□□□ -0.24
CBWD3-208ENST00000612050 CCDC113Q9H0I3 377 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 ZHX3Q9H4I2 956 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 HES2Q9Y543 173 aa13.56□□□□□ -0.24
CBWD3-208ENST00000612050 MEIS3P2A8K0S8 358 aa13.55□□□□□ -0.24
CBWD3-208ENST00000612050 H3BQ06 376 aaPredicted RBP13.55□□□□□ -0.24
CBWD3-208ENST00000612050 TNFRSF10AO00220 468 aa13.55□□□□□ -0.24
CBWD3-208ENST00000612050 PLCG1P19174 1290 aa13.55□□□□□ -0.24
CBWD3-208ENST00000612050 AKAP5P24588 427 aa13.55□□□□□ -0.24
CBWD3-208ENST00000612050 IRS1P35568 1242 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms