RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 TMEM60Q9H2L4 133 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 ADAM7Q9H2U9 754 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 FOXP1Q9H334 677 aaPredicted RBP10.88□□□□□ -0.67
VRK3-216ENST00000599342 TUFT1Q9NNX1 390 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 C5orf42Q9H799 3197 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 TMEM221A6NGB7 291 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 ARL5CA6NH57 179 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 M0R296 226 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 NRP1O14786 923 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 SSBP05455 408 aaKnown RBP eCLIP10.87□□□□□ -0.67
VRK3-216ENST00000599342 URODP06132 367 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 CENPBP07199 599 aaPredicted RBP10.87□□□□□ -0.67
VRK3-216ENST00000599342 OR52Z1P0C646 297 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 EPCAMP16422 314 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 ARF4P18085 180 aaPredicted RBP10.87□□□□□ -0.67
VRK3-216ENST00000599342 GLRA2P23416 452 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 KLRC2P26717 231 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 OR1G1P47890 313 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 AFF1P51825 1210 aaKnown RBP10.87□□□□□ -0.67
VRK3-216ENST00000599342 PTPN14Q15678 1187 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 HAUS3Q68CZ6 603 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 TRIM67Q6ZTA4 783 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 MAEAQ7L5Y9 396 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 ZBTB8OSQ8IWT0 167 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 SUGP1Q8IWZ8 645 aaKnown RBP10.87□□□□□ -0.67
VRK3-216ENST00000599342 PBXIP1Q96AQ6 731 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 ZSCAN31Q96LW9 406 aaPredicted RBP10.87□□□□□ -0.67
VRK3-216ENST00000599342 GAD1Q99259 594 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 POMKQ9H5K3 350 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 SH2B1Q9NRF2 756 aaPredicted RBP10.87□□□□□ -0.67
VRK3-216ENST00000599342 MRPL17Q9NRX2 175 aaKnown RBP10.87□□□□□ -0.67
VRK3-216ENST00000599342 DBR1Q9UK59 544 aaKnown RBP10.87□□□□□ -0.67
VRK3-216ENST00000599342 NOL7Q9UMY1 257 aaKnown RBP10.87□□□□□ -0.67
VRK3-216ENST00000599342 SSX2IPQ9Y2D8 614 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 GIT1Q9Y2X7 761 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 PRG3Q9Y2Y8 225 aaPredicted RBP10.87□□□□□ -0.67
VRK3-216ENST00000599342 HES2Q9Y543 173 aa10.87□□□□□ -0.67
VRK3-216ENST00000599342 A0A087WWV3 80 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 B4GALT3O60512 393 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 MED24O75448 989 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 SOD2P04179 222 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 SPATA31C1P0DKV0 1188 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 RBM25P49756 843 aaKnown RBP10.86□□□□□ -0.67
VRK3-216ENST00000599342 SCNN1GP51170 649 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 SIGLEC14Q08ET2 396 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 ZNF174Q15697 407 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 PTPN21Q16825 1174 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 TMEM132AQ24JP5 1023 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 TTC38Q5R3I4 469 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 ATAT1Q5SQI0 421 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 KIAA1841Q6NSI8 718 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 SLC27A1Q6PCB7 646 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 ELMSAN1Q6PJG2 1045 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 BMP8AQ7Z5Y6 402 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 CATSPER3Q86XQ3 398 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 TDRD5Q8NAT2 981 aaKnown RBP10.86□□□□□ -0.67
VRK3-216ENST00000599342 NACC1Q96RE7 527 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 RPS6KC1Q96S38 1066 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 POLR3CQ9BUI4 534 aaPredicted RBP10.86□□□□□ -0.67
VRK3-216ENST00000599342 VN1R3Q9BXE9 311 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 NXF3Q9H4D5 531 aaKnown RBP10.86□□□□□ -0.67
VRK3-216ENST00000599342 SFXN1Q9H9B4 322 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 GPRC5CQ9NQ84 441 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 CDH22Q9UJ99 828 aa10.86□□□□□ -0.67
VRK3-216ENST00000599342 ARHGEF35A5YM69 484 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 C2CD4DB7Z1M9 353 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 C2CD2LO14523 706 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 INPPL1O15357 1258 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 B4GALT5O43286 388 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 NPTXRO95502 500 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 WEE2P0C1S8 567 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 AKAP5P24588 427 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 RPA1P27694 616 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 HOXD11P31277 338 aaPredicted RBP10.85□□□□□ -0.67
VRK3-216ENST00000599342 TRAPPC10P48553 1259 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 MTMR3Q13615 1198 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 AMHR2Q16671 573 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 POTEGQ6S5H5 508 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 TMC5Q6UXY8 1006 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 NOSTRINQ8IVI9 506 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 COLGALT2Q8IYK4 626 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 C12orf76Q8N812 135 aaPredicted RBP10.85□□□□□ -0.67
VRK3-216ENST00000599342 FBXO18Q8NFZ0 1043 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 SLC22A17Q8WUG5 538 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 PRIMPOLQ96LW4 560 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 FBXL18Q96ME1 805 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 ZFP42Q96MM3 310 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 KLHL5Q96PQ7 755 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 HERC2P3Q9BVR0 1158 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 C2orf40Q9H1Z8 148 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 RNF39Q9H2S5 420 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 PRMT7Q9NVM4 692 aaPredicted RBP10.85□□□□□ -0.67
VRK3-216ENST00000599342 MARCH5Q9NX47 278 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 PARP2Q9UGN5 583 aa10.85□□□□□ -0.67
VRK3-216ENST00000599342 A0A1B0GUA9 196 aa10.84□□□□□ -0.67
VRK3-216ENST00000599342 N4BP3O15049 544 aa10.84□□□□□ -0.67
VRK3-216ENST00000599342 ADH1AP07327 375 aa10.84□□□□□ -0.67
VRK3-216ENST00000599342 CNPP09543 421 aaKnown RBP10.84□□□□□ -0.67
VRK3-216ENST00000599342 MUTP22033 750 aa10.84□□□□□ -0.67
VRK3-216ENST00000599342 GLUD2P49448 558 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms