RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 NRDE2Q9H7Z3 1164 aa10.71□□□□□ -0.69
VRK3-215ENST00000599138 TLR9Q9NR96 1032 aa10.71□□□□□ -0.69
VRK3-215ENST00000599138 BLOC1S4Q9NUP1 217 aa10.71□□□□□ -0.69
VRK3-215ENST00000599138 SPG21Q9NZD8 308 aa10.71□□□□□ -0.69
VRK3-215ENST00000599138 ARHGAP28Q9P2N2 729 aa10.71□□□□□ -0.69
VRK3-215ENST00000599138 KANSL3Q9P2N6 904 aa10.71□□□□□ -0.69
VRK3-215ENST00000599138 ZMYM2Q9UBW7 1377 aa10.71□□□□□ -0.69
VRK3-215ENST00000599138 DAXXQ9UER7 740 aaPredicted RBP10.71□□□□□ -0.69
VRK3-215ENST00000599138 HES2Q9Y543 173 aa10.71□□□□□ -0.69
VRK3-215ENST00000599138 TDRD15B5MCY1 1934 aaKnown RBP10.7□□□□□ -0.7
VRK3-215ENST00000599138 ARL5CA6NH57 179 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 DLL1O00548 723 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 N4BP3O15049 544 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 NPTXRO95502 500 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 GALTP07902 379 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 PLCG1P19174 1290 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 MARCKSP29966 332 aaPredicted RBP10.7□□□□□ -0.7
VRK3-215ENST00000599138 LTBRP36941 435 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 ALDH7A1P49419 539 aaKnown RBP10.7□□□□□ -0.7
VRK3-215ENST00000599138 PEX3P56589 373 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 ERVFC1P60507 584 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 DMP1Q13316 513 aaPredicted RBP10.7□□□□□ -0.7
VRK3-215ENST00000599138 PRPF4BQ13523 1007 aaKnown RBP10.7□□□□□ -0.7
VRK3-215ENST00000599138 KARSQ15046 597 aaKnown RBP10.7□□□□□ -0.7
VRK3-215ENST00000599138 LEXMQ3ZCV2 418 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 NT5DC1Q5TFE4 455 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 PDE12Q6L8Q7 609 aaKnown RBP10.7□□□□□ -0.7
VRK3-215ENST00000599138 USP49Q70CQ1 688 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 TAS1R3Q7RTX0 852 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 CDR2LQ86X02 465 aaPredicted RBP10.7□□□□□ -0.7
VRK3-215ENST00000599138 ZNF280BQ86YH2 543 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 GSTCDQ8NEC7 633 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 SPIRE2Q8WWL2 714 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 SYMPKQ92797 1274 aaKnown RBP10.7□□□□□ -0.7
VRK3-215ENST00000599138 KCNN1Q92952 543 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 CALML4Q96GE6 196 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 CDK5RAP3Q96JB5 506 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 GAD1Q99259 594 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 NXF3Q9H4D5 531 aaKnown RBP10.7□□□□□ -0.7
VRK3-215ENST00000599138 TMEM134Q9H6X4 195 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 INPP5FQ9Y2H2 1132 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 GIT1Q9Y2X7 761 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 PCDHGC5Q9Y5F6 944 aa10.7□□□□□ -0.7
VRK3-215ENST00000599138 PHLPP2Q6ZVD8 1323 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 K7ERI5 159 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 ZC3H11AO75152 810 aaKnown RBP eCLIP10.69□□□□□ -0.7
VRK3-215ENST00000599138 DDHD2O94830 711 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 PLS3P13797 630 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 GTF2F1P35269 517 aaKnown RBP eCLIP10.69□□□□□ -0.7
VRK3-215ENST00000599138 SLC11A1P49279 550 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 KCNQ1P51787 676 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 KRT17Q04695 432 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 DSC1Q08554 894 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 ADAM15Q13444 863 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 EEF1DP3Q658K8 133 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 ADGRD2Q7Z7M1 963 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 TMEM173Q86WV6 379 aaPredicted RBP10.69□□□□□ -0.7
VRK3-215ENST00000599138 EFHBQ8N7U6 833 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 LINC00301Q8NCQ3 95 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 URGCPQ8TCY9 931 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 BCL7CQ8WUZ0 217 aaPredicted RBP10.69□□□□□ -0.7
VRK3-215ENST00000599138 RAD54LQ92698 747 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 IGSF21Q96ID5 467 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 EPSTI1Q96J88 318 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 ZFP42Q96MM3 310 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 CLIC6Q96NY7 704 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 TMEM175Q9BSA9 504 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 TRIM6Q9C030 488 aaPredicted RBP10.69□□□□□ -0.7
VRK3-215ENST00000599138 PTPRHQ9HD43 1115 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 MIOSQ9NXC5 875 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 DNAJB4Q9UDY4 337 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 PUF60Q9UHX1 559 aaKnown RBP10.69□□□□□ -0.7
VRK3-215ENST00000599138 KCNG1Q9UIX4 513 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 USP20Q9Y2K6 914 aa10.69□□□□□ -0.7
VRK3-215ENST00000599138 RBM19Q9Y4C8 960 aaKnown RBP10.69□□□□□ -0.7
VRK3-215ENST00000599138 NPHP3-ACAD11A0A0J9YXS1 232 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 CCDC169A6NNP5 214 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 SFI1A8K8P3 1242 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 NT5C1B-RDH14C9J2C7 533 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 ABLIM1O14639 778 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 EFEMP2O95967 443 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 POMCP01189 267 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 SSBP05455 408 aaKnown RBP eCLIP10.68□□□□□ -0.7
VRK3-215ENST00000599138 ZSCAN22P10073 491 aaPredicted RBP10.68□□□□□ -0.7
VRK3-215ENST00000599138 KCNA5P22460 613 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 AKAP5P24588 427 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 DDIT3P35638 169 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 MLH1P40692 756 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 ZNF131P52739 623 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 CEBPZQ03701 1054 aaKnown RBP10.68□□□□□ -0.7
VRK3-215ENST00000599138 RNASELQ05823 741 aaKnown RBP10.68□□□□□ -0.7
VRK3-215ENST00000599138 RAD51AP2Q09MP3 1159 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 MCM6Q14566 821 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 SPECC1Q5M775 1068 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 ATF7IP2Q5U623 682 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 DDX53Q86TM3 631 aaKnown RBP10.68□□□□□ -0.7
VRK3-215ENST00000599138 COLGALT2Q8IYK4 626 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 HACE1Q8IYU2 909 aa10.68□□□□□ -0.7
VRK3-215ENST00000599138 KRI1Q8N9T8 703 aaKnown RBP10.68□□□□□ -0.7
VRK3-215ENST00000599138 TMEM161BQ8NDZ6 487 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms