RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 MRPS6P82932 125 aaKnown RBP16.65■□□□□ 0.26
TRIM28-209ENST00000597423 HIC1Q14526 733 aa16.65■□□□□ 0.26
TRIM28-209ENST00000597423 MAN2A1Q16706 1144 aa16.65■□□□□ 0.26
TRIM28-209ENST00000597423 KYAT1Q16773 422 aa16.65■□□□□ 0.26
TRIM28-209ENST00000597423 INTS8Q75QN2 995 aaKnown RBP16.65■□□□□ 0.26
TRIM28-209ENST00000597423 ANKLE1Q8NAG6 615 aa16.65■□□□□ 0.26
TRIM28-209ENST00000597423 PPP1R13LQ8WUF5 828 aa16.65■□□□□ 0.26
TRIM28-209ENST00000597423 EEF2KMTQ96G04 330 aa16.65■□□□□ 0.26
TRIM28-209ENST00000597423 ACO2Q99798 780 aaKnown RBP16.65■□□□□ 0.26
TRIM28-209ENST00000597423 XPO4Q9C0E2 1151 aaKnown RBP16.65■□□□□ 0.26
TRIM28-209ENST00000597423 PCIF1Q9H4Z3 704 aa16.65■□□□□ 0.26
TRIM28-209ENST00000597423 AGO2Q9UKV8 859 aaKnown RBP16.65■□□□□ 0.26
TRIM28-209ENST00000597423 GINS2Q9Y248 185 aa16.65■□□□□ 0.26
TRIM28-209ENST00000597423 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.65■□□□□ 0.26
TRIM28-209ENST00000597423 A0A1B0GTH6 734 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 ZNF233A6NK53 670 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 PES1O00541 588 aaKnown RBP16.64■□□□□ 0.25
TRIM28-209ENST00000597423 EXTL3O43909 919 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 STX10O60499 249 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 DARSP14868 501 aaKnown RBP16.64■□□□□ 0.25
TRIM28-209ENST00000597423 CDC25BP30305 580 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 AXLP30530 894 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 TMEM62Q0P6H9 643 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 NR1I3Q14994 352 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 VWA3BQ502W6 1294 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 ATF7IP2Q5U623 682 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 CATSPER4Q7RTX7 472 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 GPD1LQ8N335 351 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 CCDC155Q8N6L0 562 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 U2AF1L4Q8WU68 220 aaKnown RBP16.64■□□□□ 0.25
TRIM28-209ENST00000597423 ZNF668Q96K58 619 aaPredicted RBP16.64■□□□□ 0.25
TRIM28-209ENST00000597423 MSTO1Q9BUK6 570 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 VPS16Q9H269 839 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 RTN4Q9NQC3 1192 aaKnown RBP16.64■□□□□ 0.25
TRIM28-209ENST00000597423 TAB2Q9NYJ8 693 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 TNFSF13BQ9Y275 285 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 TRPV2Q9Y5S1 764 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 MROH7Q68CQ1 1323 aa16.64■□□□□ 0.25
TRIM28-209ENST00000597423 A0A0B4J269 797 aa16.63■□□□□ 0.25
TRIM28-209ENST00000597423 TLR3O15455 904 aaKnown RBP16.63■□□□□ 0.25
TRIM28-209ENST00000597423 AKAP3O75969 853 aa16.63■□□□□ 0.25
TRIM28-209ENST00000597423 ADSSP30520 456 aa16.63■□□□□ 0.25
TRIM28-209ENST00000597423 THPOP40225 353 aa16.63■□□□□ 0.25
TRIM28-209ENST00000597423 ENPEPQ07075 957 aa16.63■□□□□ 0.25
TRIM28-209ENST00000597423 NAP1L5Q96NT1 182 aaPredicted RBP16.63■□□□□ 0.25
TRIM28-209ENST00000597423 PPP1R16BQ96T49 567 aa16.63■□□□□ 0.25
TRIM28-209ENST00000597423 OSMRQ99650 979 aa16.63■□□□□ 0.25
TRIM28-209ENST00000597423 ADPGKQ9BRR6 497 aa16.63■□□□□ 0.25
TRIM28-209ENST00000597423 CBWD1Q9BRT8 395 aa16.63■□□□□ 0.25
TRIM28-209ENST00000597423 MYH11P35749 1972 aa16.63■□□□□ 0.25
TRIM28-209ENST00000597423 KAT6AQ92794 2004 aa16.63■□□□□ 0.25
TRIM28-209ENST00000597423 LGALS16A8MUM7 142 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 AP5Z1O43299 807 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 GJA8P48165 433 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 CDK7P50613 346 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 UBXN1Q04323 297 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 MCL1Q07820 350 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 MPZL3Q6UWV2 235 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 FAM43BQ6ZT52 329 aaPredicted RBP16.62■□□□□ 0.25
TRIM28-209ENST00000597423 TRIM59Q8IWR1 403 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 USP38Q8NB14 1042 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 RDH13Q8NBN7 331 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 FBXL18Q96ME1 805 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 SENP6Q9GZR1 1112 aaPredicted RBP16.62■□□□□ 0.25
TRIM28-209ENST00000597423 IKZF4Q9H2S9 585 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 NDST4Q9H3R1 872 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 MINDY3Q9H8M7 445 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 ANKFY1Q9P2R3 1169 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 CDY2AQ9Y6F7 541 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 CNTNAP2Q9UHC6 1331 aa16.62■□□□□ 0.25
TRIM28-209ENST00000597423 SCN10AQ9Y5Y9 1956 aa16.61■□□□□ 0.25
TRIM28-209ENST00000597423 GPR182O15218 404 aa16.61■□□□□ 0.25
TRIM28-209ENST00000597423 OGTO15294 1046 aa16.61■□□□□ 0.25
TRIM28-209ENST00000597423 MCF2P10911 925 aa16.61■□□□□ 0.25
TRIM28-209ENST00000597423 DEKP35659 375 aaKnown RBP16.61■□□□□ 0.25
TRIM28-209ENST00000597423 CASP4P49662 377 aa16.61■□□□□ 0.25
TRIM28-209ENST00000597423 POU5F1Q01860 360 aaKnown RBP16.61■□□□□ 0.25
TRIM28-209ENST00000597423 CETN1Q12798 172 aa16.61■□□□□ 0.25
TRIM28-209ENST00000597423 BFSP2Q13515 415 aa16.61■□□□□ 0.25
TRIM28-209ENST00000597423 SNX17Q15036 470 aa16.61■□□□□ 0.25
TRIM28-209ENST00000597423 SURF1Q15526 300 aa16.61■□□□□ 0.25
TRIM28-209ENST00000597423 SNRNP35Q16560 246 aaKnown RBP16.61■□□□□ 0.25
TRIM28-209ENST00000597423 SLC39A4Q6P5W5 647 aa16.61■□□□□ 0.25
TRIM28-209ENST00000597423 APTXQ7Z2E3 356 aaKnown RBP16.61■□□□□ 0.25
TRIM28-209ENST00000597423 CCDC51Q96ER9 411 aa16.61■□□□□ 0.25
TRIM28-209ENST00000597423 PPP1R9BQ96SB3 815 aa16.61■□□□□ 0.25
TRIM28-209ENST00000597423 FAM213AQ9BRX8 229 aa16.61■□□□□ 0.25
TRIM28-209ENST00000597423 TRMT13Q9NUP7 481 aaKnown RBP16.61■□□□□ 0.25
TRIM28-209ENST00000597423 IMPACTQ9P2X3 320 aa16.61■□□□□ 0.25
TRIM28-209ENST00000597423 SQORQ9Y6N5 450 aa16.61■□□□□ 0.25
TRIM28-209ENST00000597423 A0A1B0GUA9 196 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 TISP43B9A030 160 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 TSPAN1O60635 241 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 AFPP02771 609 aaKnown RBP16.6■□□□□ 0.25
TRIM28-209ENST00000597423 TPM1P09493 284 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 VAMP7P51809 220 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 NOLC1Q14978 699 aaKnown RBP eCLIP16.6■□□□□ 0.255e-7■■□□□ 14.3
TRIM28-209ENST00000597423 AMHR2Q16671 573 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 DCAF4L1Q3SXM0 396 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 ZNF568Q3ZCX4 644 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms