RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 DRC1Q96MC2 740 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 GSDMAQ96QA5 445 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 SH2D3AQ9BRG2 576 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 REEP2Q9BRK0 252 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 RNPEPQ9H4A4 650 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 DLL3Q9NYJ7 618 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 ODF2LQ9ULJ1 636 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 PCDHA5Q9Y5H7 936 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 ZZEF1O43149 2961 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 SPTBN2O15020 2390 aa13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 NPHP3-ACAD11A0A0J9YXS1 232 aa13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 PVALEFA0A1B0GWK0 134 aa13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 GAS2O43903 313 aaKnown RBP13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 HIP1RO75146 1068 aa13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 INSRRP14616 1297 aa13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 GAP43P17677 238 aa13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 IGBP1P78318 339 aa13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 GRIK4Q16099 956 aa13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 PTGISQ16647 500 aa13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 FAM102BQ5T8I3 360 aa13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 CCDC155Q8N6L0 562 aa13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 C7orf31Q8N865 590 aa13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 TRIML1Q8N9V2 468 aa13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 KAT2BQ92831 832 aa13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 GTPBP4Q9BZE4 634 aaKnown RBP13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 PANK4Q9NVE7 773 aa13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 COL4A3BPQ9Y5P4 624 aa13.3□□□□□ -0.28
SHKBP1-213ENST00000597325 RRN3P2A6NIE6 340 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 C5orf67F2Z3F1 127 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 HAS3O00219 553 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 BIN1O00499 593 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 LINC00271P0C7V0 271 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 SMIM10L2AP0DMW4 78 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 SMIM10L2BP0DMW5 78 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 CCDC192P0DO97 292 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 GNAT1P11488 350 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 CKBP12277 381 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 CACNB1Q02641 598 aaPredicted RBP13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 COASYQ13057 564 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 GIT2Q14161 759 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 MBTPS1Q14703 1052 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 KCNB1Q14721 858 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 TARBP2Q15633 366 aaKnown RBP13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 STX1AQ16623 288 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 PTPN21Q16825 1174 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 KMT5BQ4FZB7 885 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 ARSHQ5FYA8 562 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 NT5DC1Q5TFE4 455 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 MAEAQ7L5Y9 396 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 TCP11Q8WWU5 503 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 KIFAP3Q92845 792 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 DHX33Q9H6R0 707 aaKnown RBP13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 PARVGQ9HBI0 331 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 CLEC1BQ9P126 229 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 TUBE1Q9UJT0 475 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 MAN1B1Q9UKM7 699 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 NOD1Q9Y239 953 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 NRCAMQ92823 1304 aa13.29□□□□□ -0.28
SHKBP1-213ENST00000597325 ZBTB42B2RXF5 422 aa13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 MAGEB2O15479 319 aa13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 MAFO75444 373 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 DNM2P50570 870 aa13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 COL9A2Q14055 689 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 GDF6Q6KF10 455 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 SESTD1Q86VW0 696 aa13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 MYOCDQ8IZQ8 938 aa13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 MYCT1Q8N699 235 aa13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 SPATA20Q8TB22 786 aa13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 TRAPPC12Q8WVT3 735 aa13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 COL26A1Q96A83 441 aa13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 DNAJC19Q96DA6 116 aa13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 PHF7Q9BWX1 381 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 LMAN2LQ9H0V9 348 aa13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 POLR3FQ9H1D9 316 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 ANO10Q9NW15 660 aa13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 LARSQ9P2J5 1176 aaKnown RBP13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 SEL1LQ9UBV2 794 aa13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 DACH1Q9UI36 760 aa13.28□□□□□ -0.28
SHKBP1-213ENST00000597325 FRMD3A2A2Y4 597 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 C17orf102A2RUQ5 167 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 RSPH10B2B2RC85 870 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 GRM6O15303 877 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 KLRC4O43908 158 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 RHOBTB3O94955 611 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 C22orf31O95567 290 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 RSPH10BP0C881 870 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 TMOD1P28289 359 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 SARSP49591 514 aaKnown RBP13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 NLRP12P59046 1061 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 TYRO3Q06418 890 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 PSMD2Q13200 908 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 DMP1Q13316 513 aaPredicted RBP13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 ST3GAL2Q16842 350 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 FAM26FQ5R3K3 315 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 ODR4Q5SWX8 454 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 ISM2Q6H9L7 571 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 STXBP4Q6ZWJ1 553 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 SFR1Q86XK3 245 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 METTL13Q8N6R0 699 aa13.27□□□□□ -0.29
SHKBP1-213ENST00000597325 LMBR1Q8WVP7 490 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms