RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 HELQQ8TDG4 1101 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 GDPD5Q8WTR4 605 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 LEO1Q8WVC0 666 aaPredicted RBP13.1□□□□□ -0.31
LIG3-213ENST00000590630 KCNN1Q92952 543 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 LPPQ93052 612 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 P2RX5Q93086 422 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 PYM1Q9BRP8 204 aaKnown RBP13.1□□□□□ -0.31
LIG3-213ENST00000590630 ADPGKQ9BRR6 497 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 EIF2AQ9BY44 585 aaKnown RBP13.1□□□□□ -0.31
LIG3-213ENST00000590630 PANK2Q9BZ23 570 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 PDZD7Q9H5P4 517 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 AAASQ9NRG9 546 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 TYW1Q9NV66 732 aaKnown RBP13.1□□□□□ -0.31
LIG3-213ENST00000590630 FAM13BQ9NYF5 915 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 LMCD1Q9NZU5 365 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 IPPQ9Y573 584 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 PLXNA4Q9HCM2 1894 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 ATG2AQ2TAZ0 1938 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 ZMYM2Q9UBW7 1377 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 RFXAPO00287 272 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 CITO14578 2027 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 ITGA4P13612 1032 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 LAG3P18627 525 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 ABCD1P33897 745 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 ANP32AP39687 249 aaKnown RBP13.09□□□□□ -0.31
LIG3-213ENST00000590630 NCKAP1LP55160 1127 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 STRN3Q13033 797 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 E2F4Q16254 413 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 CSPP1Q1MSJ5 1256 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 SPOUT1Q5T280 376 aaKnown RBP13.09□□□□□ -0.31
LIG3-213ENST00000590630 ATF7IP2Q5U623 682 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 RESP18Q5W5W9 173 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 AGMOQ6ZNB7 445 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 APBB1IPQ7Z5R6 666 aaPredicted RBP13.09□□□□□ -0.31
LIG3-213ENST00000590630 MYCT1Q8N699 235 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 SMG8Q8ND04 991 aaKnown RBP13.09□□□□□ -0.31
LIG3-213ENST00000590630 SLC17A8Q8NDX2 589 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 MAFAQ8NHW3 353 aaPredicted RBP13.09□□□□□ -0.31
LIG3-213ENST00000590630 DDX12PQ92771 950 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 MRPL4Q9BYD3 311 aaKnown RBP13.09□□□□□ -0.31
LIG3-213ENST00000590630 RSAD1Q9HA92 442 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 PCDHB12Q9Y5F1 795 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 MYO7AQ13402 2215 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 TRIP11Q15643 1979 aa13.09□□□□□ -0.31
LIG3-213ENST00000590630 CARNS1A5YM72 827 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 MYMKA6NI61 221 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 TTLL13PA6NNM8 815 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 MEIS3P2A8K0S8 358 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 OFD1O75665 1012 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 NPTXRO95502 500 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 EDN1P05305 212 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 MAPTP10636 758 aaKnown RBP13.08□□□□□ -0.32
LIG3-213ENST00000590630 GPM6BQ13491 265 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 PTPROQ16827 1216 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 DCAF4L1Q3SXM0 396 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 LONRF3Q496Y0 759 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 NOMO2Q5JPE7 1267 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 NT5DC1Q5TFE4 455 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 ADALQ6DHV7 355 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 LRRC55Q6ZSA7 311 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 TAS1R3Q7RTX0 852 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 CDR2LQ86X02 465 aaPredicted RBP13.08□□□□□ -0.32
LIG3-213ENST00000590630 URGCPQ8TCY9 931 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 LRRC27Q9C0I9 530 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 TNMDQ9H2S6 317 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 NXF3Q9H4D5 531 aaKnown RBP13.08□□□□□ -0.32
LIG3-213ENST00000590630 CWH43Q9H720 699 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 MAGEF1Q9HAY2 307 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 KBTBD4Q9NVX7 518 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 KANSL3Q9P2N6 904 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 SEL1LQ9UBV2 794 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 TNFSF13BQ9Y275 285 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 MTCH2Q9Y6C9 303 aa13.08□□□□□ -0.32
LIG3-213ENST00000590630 K7ENM7 598 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 INPPL1O15357 1258 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 POLR2DO15514 142 aaKnown RBP13.07□□□□□ -0.32
LIG3-213ENST00000590630 TRAK2O60296 914 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 GAP43P17677 238 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 CMA1P23946 247 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 PPM1AP35813 382 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 AMPD3Q01432 767 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 RNASELQ05823 741 aaKnown RBP13.07□□□□□ -0.32
LIG3-213ENST00000590630 DYMQ7RTS9 669 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 HAUS6Q7Z4H7 955 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 FAM178BQ8IXR5 827 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 COLGALT1Q8NBJ5 622 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 DHX58Q96C10 678 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 DNAJC19Q96DA6 116 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 MRPL38Q96DV4 380 aaKnown RBP13.07□□□□□ -0.32
LIG3-213ENST00000590630 CHAMP1Q96JM3 812 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 ACO2Q99798 780 aaKnown RBP13.07□□□□□ -0.32
LIG3-213ENST00000590630 LMAN2LQ9H0V9 348 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 ZHX3Q9H4I2 956 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 TBC1D13Q9NVG8 400 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 HCSTQ9UBK5 93 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 KCNH3Q9ULD8 1083 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 CIZ1Q9ULV3 898 aaPredicted RBP13.07□□□□□ -0.32
LIG3-213ENST00000590630 PLAGL2Q9UPG8 496 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 INPP5FQ9Y2H2 1132 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 GIT1Q9Y2X7 761 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms