RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 PDE12Q6L8Q7 609 aaKnown RBP4.64□□□□□ -1.67
LIG3-211ENST00000588713 ARMCX5Q6P1M9 558 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 LEKR1Q6ZMV7 388 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 CHST3Q7LGC8 479 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 TMC6Q7Z403 805 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 ADGRA1Q86SQ6 560 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 FERMT3Q86UX7 667 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 TICAM2Q86XR7 235 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 CHCHD4Q8N4Q1 142 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 NECAB1Q8N987 351 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 EHBP1Q8NDI1 1231 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 ENGASEQ8NFI3 743 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 GOLGA1Q92805 767 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 KAT2BQ92831 832 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 SMARCE1Q969G3 411 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 KAZALD1Q96I82 304 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 KLHL5Q96PQ7 755 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 TUBB2BQ9BVA1 445 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 FAM107BQ9H098 131 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 USP44Q9H0E7 712 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 EHD4Q9H223 541 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 ACBD3Q9H3P7 528 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 GOLPH3LQ9H4A5 285 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 ACAD9Q9H845 621 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 ARFGAP3Q9NP61 516 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 LTB4R2Q9NPC1 389 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 TRMT1Q9NXH9 659 aaKnown RBP4.64□□□□□ -1.67
LIG3-211ENST00000588713 RCOR1Q9UKL0 485 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 TMX2Q9Y320 296 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 MRFAP1Q9Y605 127 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 CELSR3Q9NYQ7 3312 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 PATJQ8NI35 1801 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 NEDD4P46934 1319 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 PLXNA4Q9HCM2 1894 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 PARP14Q460N5 1801 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 KIAA1671Q9BY89 1806 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 COL12A1Q99715 3063 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 ASXL3Q9C0F0 2248 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 DHX16O60231 1041 aaKnown RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 PFKFB2O60825 505 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 N4BP1O75113 896 aaKnown RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 CLASP2O75122 1294 aaKnown RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 ERLIN1O75477 346 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 ALDH1L1O75891 902 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 SASH3O75995 380 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 POLR3DP05423 398 aaPredicted RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 HMGB1P09429 215 aaKnown RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 IFIT2P09913 472 aaKnown RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 NBPF7P0C2Y1 421 aaPredicted RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 ZNF286BP0CG31 522 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 GHRP10912 638 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 TDGF1P13385 188 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 TARSP26639 723 aaKnown RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 ADD1P35611 737 aaKnown RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 MAGEA9P43362 315 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 TNNT3P45378 269 aaPredicted RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 ABCG1P45844 678 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 NLRP12P59046 1061 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 SIM1P81133 766 aaPredicted RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 PPP2R3AQ06190 1150 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 NMIQ13287 307 aaPredicted RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 PPP2R5DQ14738 602 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 MLF2Q15773 248 aaPredicted RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 KIAA0753Q2KHM9 967 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 LETM2Q2VYF4 491 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 UAP1L1Q3KQV9 507 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 TTC31Q49AM3 519 aaPredicted RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 GORABQ5T7V8 394 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 TMEM179Q6ZVK1 233 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 RSRC2Q7L4I2 434 aaKnown RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 TMC7Q7Z402 723 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 CABP7Q86V35 215 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 HOMER1Q86YM7 354 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 SIAH1Q8IUQ4 282 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 FMR1NBQ8N0W7 255 aaPredicted RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 FSIP1Q8NA03 581 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 MSANTD4Q8NCY6 345 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 LRRN4CLQ8ND94 238 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 MYADMQ96S97 322 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 MYCBPQ99417 103 aaPredicted RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 TRIM4Q9C037 500 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 XPO4Q9C0E2 1151 aaKnown RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 GBP3Q9H0R5 595 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 TMX1Q9H3N1 280 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 GOPCQ9HD26 462 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 RNF146Q9NTX7 359 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 CEP126Q9P2H0 1117 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 ANKMY1Q9P2S6 941 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 NXF1Q9UBU9 619 aaKnown RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 RSPH14Q9UHP6 348 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 WASF2Q9Y6W5 498 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 PDS5AQ29RF7 1337 aaKnown RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 ATXN2Q99700 1313 aaKnown RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 C2CD3Q4AC94 2353 aa4.63□□□□□ -1.67
LIG3-211ENST00000588713 SPTAN1Q13813 2472 aaKnown RBP4.63□□□□□ -1.67
LIG3-211ENST00000588713 MIA3Q5JRA6 1907 aa4.62□□□□□ -1.67
LIG3-211ENST00000588713 RALGAPA1Q6GYQ0 2036 aa4.62□□□□□ -1.67
LIG3-211ENST00000588713 PTPDC1A2A3K4 754 aa4.62□□□□□ -1.67
LIG3-211ENST00000588713 VWA3AA6NCI4 1184 aa4.62□□□□□ -1.67
LIG3-211ENST00000588713 CAPN8A6NHC0 703 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms