RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 SERHL2Q9H4I8 314 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 ANKFY1Q9P2R3 1169 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 GAGE12BA1L429 117 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 GAGE12HA6NDE8 117 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 PRR5-ARHGAP8B1AHC4 643 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 MASP2O00187 686 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 NCR1O76036 304 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 SEC24DO94855 1032 aaPredicted RBP4.77□□□□□ -1.65
VPS4B-203ENST00000588323 F2P00734 622 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 IL12RB1P42701 662 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 GPR15P49685 360 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 NEK4P51957 841 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 CCDC178Q5BJE1 867 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 ZBTB41Q5SVQ8 909 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 Q6YL49 198 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 XYLT1Q86Y38 959 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 NXPE1Q8N323 547 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 LCORLQ8N3X6 602 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 MSL3Q8N5Y2 521 aaKnown RBP4.77□□□□□ -1.65
VPS4B-203ENST00000588323 LILRA3Q8N6C8 439 aaPredicted RBP4.77□□□□□ -1.65
VPS4B-203ENST00000588323 CHTF18Q8WVB6 975 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 WDR11Q9BZH6 1224 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 KANSL2Q9H9L4 492 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 SPON1Q9HCB6 807 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 AKIP1Q9NQ31 210 aa4.77□□□□□ -1.65
VPS4B-203ENST00000588323 THG1LQ9NWX6 298 aaKnown RBP4.77□□□□□ -1.65
VPS4B-203ENST00000588323 TMEM200CA6NKL6 621 aa4.76□□□□□ -1.65
VPS4B-203ENST00000588323 ZNF891A8MT65 544 aaPredicted RBP4.76□□□□□ -1.65
VPS4B-203ENST00000588323 LEFTY2O00292 366 aa4.76□□□□□ -1.65
VPS4B-203ENST00000588323 KIAA0355O15063 1070 aa4.76□□□□□ -1.65
VPS4B-203ENST00000588323 NDUFA10O95299 355 aa4.76□□□□□ -1.65
VPS4B-203ENST00000588323 PFKMP08237 780 aa4.76□□□□□ -1.65
VPS4B-203ENST00000588323 AVPR1BP47901 424 aa4.76□□□□□ -1.65
VPS4B-203ENST00000588323 KPNA1P52294 538 aaPredicted RBP4.76□□□□□ -1.65
VPS4B-203ENST00000588323 DSG1Q02413 1049 aa4.76□□□□□ -1.65
VPS4B-203ENST00000588323 MGAT5Q09328 741 aa4.76□□□□□ -1.65
VPS4B-203ENST00000588323 PLXDC1Q8IUK5 500 aa4.76□□□□□ -1.65
VPS4B-203ENST00000588323 ARHGEF19Q8IW93 802 aa4.76□□□□□ -1.65
VPS4B-203ENST00000588323 SYNPOQ8N3V7 929 aa4.76□□□□□ -1.65
VPS4B-203ENST00000588323 ZNF496Q96IT1 587 aaPredicted RBP4.76□□□□□ -1.65
VPS4B-203ENST00000588323 FDXACB1Q9BRP7 624 aaPredicted RBP4.76□□□□□ -1.65
VPS4B-203ENST00000588323 DIRC3C9JPN6 131 aa4.75□□□□□ -1.65
VPS4B-203ENST00000588323 CD38P28907 300 aa4.75□□□□□ -1.65
VPS4B-203ENST00000588323 RNASE9P60153 205 aaKnown RBP4.75□□□□□ -1.65
VPS4B-203ENST00000588323 APBA1Q02410 837 aa4.75□□□□□ -1.65
VPS4B-203ENST00000588323 NHLH2Q02577 135 aa4.75□□□□□ -1.65
VPS4B-203ENST00000588323 SYCE2Q6PIF2 218 aa4.75□□□□□ -1.65
VPS4B-203ENST00000588323 GLB1L2Q8IW92 636 aa4.75□□□□□ -1.65
VPS4B-203ENST00000588323 CMTR2Q8IYT2 770 aaKnown RBP4.75□□□□□ -1.65
VPS4B-203ENST00000588323 BBC3Q96PG8 261 aaPredicted RBP4.75□□□□□ -1.65
VPS4B-203ENST00000588323 SYNPO2LQ9H987 977 aa4.75□□□□□ -1.65
VPS4B-203ENST00000588323 ADARB2Q9NS39 739 aaKnown RBP4.75□□□□□ -1.65
VPS4B-203ENST00000588323 TMEM260Q9NX78 707 aa4.75□□□□□ -1.65
VPS4B-203ENST00000588323 CHST2Q9Y4C5 530 aa4.75□□□□□ -1.65
VPS4B-203ENST00000588323 A0A1W2PR48 441 aa4.74□□□□□ -1.65
VPS4B-203ENST00000588323 TGM5O43548 720 aa4.74□□□□□ -1.65
VPS4B-203ENST00000588323 LSP1P33241 339 aa4.74□□□□□ -1.65
VPS4B-203ENST00000588323 BMPR1AP36894 532 aa4.74□□□□□ -1.65
VPS4B-203ENST00000588323 C21orf58P58505 322 aa4.74□□□□□ -1.65
VPS4B-203ENST00000588323 PPARAQ07869 468 aa4.74□□□□□ -1.65
VPS4B-203ENST00000588323 SART3Q15020 963 aaKnown RBP4.74□□□□□ -1.65
VPS4B-203ENST00000588323 UBE3CQ15386 1083 aa4.74□□□□□ -1.65
VPS4B-203ENST00000588323 BEAN1Q3B7T3 259 aa4.74□□□□□ -1.65
VPS4B-203ENST00000588323 GPR158Q5T848 1215 aa4.74□□□□□ -1.65
VPS4B-203ENST00000588323 CCDC62Q6P9F0 684 aa4.74□□□□□ -1.65
VPS4B-203ENST00000588323 DRICH1Q6PGQ1 229 aaPredicted RBP4.74□□□□□ -1.65
VPS4B-203ENST00000588323 GPRIN1Q7Z2K8 1008 aa4.74□□□□□ -1.65
VPS4B-203ENST00000588323 ZNF610Q8N9Z0 462 aa4.74□□□□□ -1.65
VPS4B-203ENST00000588323 OR10H5Q8NGA6 315 aa4.74□□□□□ -1.65
VPS4B-203ENST00000588323 CAVIN3Q969G5 261 aa4.74□□□□□ -1.65
VPS4B-203ENST00000588323 CDC5LQ99459 802 aaKnown RBP4.74□□□□□ -1.65
VPS4B-203ENST00000588323 ZSWIM4Q9H7M6 989 aa4.74□□□□□ -1.65
VPS4B-203ENST00000588323 COL11A2P13942 1736 aaPredicted RBP4.74□□□□□ -1.65
VPS4B-203ENST00000588323 ARHGEF17Q96PE2 2063 aaPredicted RBP4.74□□□□□ -1.65
VPS4B-203ENST00000588323 LOC105371045A0A1W2PR82 267 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 PRSS38A1L453 326 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 B5MCH6 92 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 PRAMEF4O60810 478 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 IGSF3O75054 1194 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 HLA-DOAP06340 250 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 CLEC2LP0C7M8 214 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 SPATA31D3P0C874 917 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 HKR1P10072 659 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 ZSCAN20P17040 1043 aaPredicted RBP4.73□□□□□ -1.65
VPS4B-203ENST00000588323 MGAT1P26572 445 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 OCRLQ01968 901 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 GUCY1B3Q02153 619 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 HNRNPA0Q13151 305 aaKnown RBP4.73□□□□□ -1.65
VPS4B-203ENST00000588323 TCEA2Q15560 299 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 ERCC6LQ2NKX8 1250 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 CNNM4Q6P4Q7 775 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 SPATA31D4Q6ZUB0 917 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 LRRTM3Q86VH5 581 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 NTN5Q8WTR8 489 aaPredicted RBP4.73□□□□□ -1.65
VPS4B-203ENST00000588323 COQ10AQ96MF6 247 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 GPR101Q96P66 508 aaPredicted RBP4.73□□□□□ -1.65
VPS4B-203ENST00000588323 POGKQ9P215 609 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 NUMBLQ9Y6R0 609 aa4.73□□□□□ -1.65
VPS4B-203ENST00000588323 NISCHQ9Y2I1 1504 aa4.72□□□□□ -1.65
VPS4B-203ENST00000588323 LTA4HP09960 611 aaKnown RBP4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms