RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CTSHP09668 335 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 IQCF3P0C7M6 154 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 CKBP12277 381 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 ZNF18P17022 549 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 EEF1GP26641 437 aaKnown RBP11.74□□□□□ -0.53
SS18-213ENST00000579640 TMEM132AQ24JP5 1023 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 ATF7IP2Q5U623 682 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 SLC39A4Q6P5W5 647 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 FAM43BQ6ZT52 329 aaPredicted RBP11.74□□□□□ -0.53
SS18-213ENST00000579640 CATSPER4Q7RTX7 472 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 APBB1IPQ7Z5R6 666 aaPredicted RBP11.74□□□□□ -0.53
SS18-213ENST00000579640 ANKRD20A12PQ8NF67 263 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 POMGNT1Q8WZA1 660 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 HSD3B7Q9H2F3 369 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 GRPEL1Q9HAV7 217 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 SAMSN1Q9NSI8 373 aaKnown RBP11.74□□□□□ -0.53
SS18-213ENST00000579640 N4BP3O15049 544 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 MAPK13O15264 365 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 CLDN3O15551 220 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 TSPAN1O60635 241 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 RPS6KA5O75582 802 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 LDHAP00338 332 aaKnown RBP11.74□□□□□ -0.53
SS18-213ENST00000579640 EDN1P05305 212 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 SELPP16109 830 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 CDK11BP21127 795 aaKnown RBP11.74□□□□□ -0.53
SS18-213ENST00000579640 PROZP22891 400 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 ADSSP30520 456 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 MRE11P49959 708 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 TLE2Q04725 743 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 TRIM60Q495X7 471 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 ZNF618Q5T7W0 954 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 MPZL3Q6UWV2 235 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 XXYLT1Q8NBI6 393 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 TMEM40Q8WWA1 233 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 CCDC51Q96ER9 411 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 CBWD1Q9BRT8 395 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 IKZF4Q9H2S9 585 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 KIAA1586Q9HCI6 787 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 PTPRHQ9HD43 1115 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 HSPBP1Q9NZL4 362 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 FRMD4BQ9Y2L6 1034 aa11.74□□□□□ -0.53
SS18-213ENST00000579640 CENPFP49454 3210 aa11.73□□□□□ -0.53
SS18-213ENST00000579640 A0A0B4J269 797 aa11.73□□□□□ -0.53
SS18-213ENST00000579640 A0A1B0GUA9 196 aa11.73□□□□□ -0.53
SS18-213ENST00000579640 KCNJ18B7U540 433 aa11.73□□□□□ -0.53
SS18-213ENST00000579640 GPR182O15218 404 aa11.73□□□□□ -0.53
SS18-213ENST00000579640 B4GALT5O43286 388 aa11.73□□□□□ -0.53
SS18-213ENST00000579640 EXOC3O60645 756 aa11.73□□□□□ -0.53
SS18-213ENST00000579640 CSDE1O75534 798 aaKnown RBP11.73□□□□□ -0.53
SS18-213ENST00000579640 PARNO95453 639 aaKnown RBP11.73□□□□□ -0.53
SS18-213ENST00000579640 EPB41P11171 864 aaKnown RBP11.73□□□□□ -0.53
SS18-213ENST00000579640 ARF4P18085 180 aaPredicted RBP11.73□□□□□ -0.53
SS18-213ENST00000579640 PSMC2P35998 433 aaKnown RBP11.73□□□□□ -0.53
SS18-213ENST00000579640 MATR3P43243 847 aaKnown RBP eCLIP11.73□□□□□ -0.539e-6■■■■□ 21.7
SS18-213ENST00000579640 CYP2J2P51589 502 aa11.73□□□□□ -0.53
SS18-213ENST00000579640 MARSP56192 900 aaKnown RBP11.73□□□□□ -0.53
SS18-213ENST00000579640 MCL1Q07820 350 aa11.73□□□□□ -0.53
SS18-213ENST00000579640 KCNJ12Q14500 433 aa11.73□□□□□ -0.53
SS18-213ENST00000579640 FBXO47Q5MNV8 452 aa11.73□□□□□ -0.53
SS18-213ENST00000579640 NOTUMQ6P988 496 aa11.73□□□□□ -0.53
SS18-213ENST00000579640 TCHPQ9BT92 498 aa11.73□□□□□ -0.53
SS18-213ENST00000579640 METTL14Q9HCE5 456 aaKnown RBP11.73□□□□□ -0.53
SS18-213ENST00000579640 AGPAT5Q9NUQ2 364 aa11.73□□□□□ -0.53
SS18-213ENST00000579640 NOC2LQ9Y3T9 749 aaKnown RBP11.73□□□□□ -0.53
SS18-213ENST00000579640 TISP43B9A030 160 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 MCF2P10911 925 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 FAAP100Q0VG06 881 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 NOLC1Q14978 699 aaKnown RBP eCLIP11.72□□□□□ -0.53
SS18-213ENST00000579640 KYAT1Q16773 422 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 DCAF4L1Q3SXM0 396 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 ZNF568Q3ZCX4 644 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 CCDC40Q4G0X9 1142 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 TCP11X2Q5H9J9 407 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 CEP135Q66GS9 1140 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 TRAF7Q6Q0C0 670 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 LRRC8DQ7L1W4 858 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 FRMD5Q7Z6J6 570 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 UBE2Q1Q7Z7E8 422 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 FAM228AQ86W67 206 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 IRF2BP1Q8IU81 584 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 GPD1LQ8N335 351 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 CNOT6LQ96LI5 555 aaKnown RBP11.72□□□□□ -0.53
SS18-213ENST00000579640 FBXL18Q96ME1 805 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 ADPGKQ9BRR6 497 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 MSTO1Q9BUK6 570 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 PCIF1Q9H4Z3 704 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 PDZD7Q9H5P4 517 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 CHST12Q9NRB3 414 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 ANKFY1Q9P2R3 1169 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 AGO2Q9UKV8 859 aaKnown RBP11.72□□□□□ -0.53
SS18-213ENST00000579640 ATP11BQ9Y2G3 1177 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 TTLL13PA6NNM8 815 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 ABLIM1O14639 778 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 EXTL3O43909 919 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 AKAP3O75969 853 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 TPM2P07951 284 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 CLTBP09497 229 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 EN2P19622 333 aaPredicted RBP11.72□□□□□ -0.53
SS18-213ENST00000579640 ENPEPQ07075 957 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 PAK2Q13177 524 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms