RNA–Protein interactions for RNA: ENST00000578525.5

CDK5RAP3-208, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 564 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-208	ENST00000578525	RTP1	P59025	263 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	GPC5	P78333	572 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	PPP2R5E	Q16537	467 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	SNRNP35	Q16560	246 aa	Known RBP	10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	NOL9	Q5SY16	702 aa	Known RBP	10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	KRT39	Q6A163	491 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	LRIG3	Q6UXM1	1119 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	CATSPERG	Q6ZRH7	1159 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	ANO5	Q75V66	913 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	PALB2	Q86YC2	1186 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	CBWD2	Q8IUF1	395 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	CD302	Q8IX05	232 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	FAM71A	Q8IYT1	594 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	MCPH1	Q8NEM0	835 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	MORC4	Q8TE76	937 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	CEP170P1	Q96L14	293 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	MFSD14A	Q96MC6	490 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	ZIM3	Q96PE6	472 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	WRNIP1	Q96S55	665 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	SH2D3A	Q9BRG2	576 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	NTPCR	Q9BSD7	190 aa	Known RBP	10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	AP1M1	Q9BXS5	423 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	THAP2	Q9H0W7	228 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	CARD9	Q9H257	536 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	PLEKHA4	Q9H4M7	779 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	ACAD9	Q9H845	621 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	ATP6V0A4	Q9HBG4	840 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	TMEM8A	Q9HCN3	771 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	TMOD4	Q9NZQ9	345 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	NOCT	Q9UK39	431 aa	Known RBP	10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	ZNF214	Q9UL59	606 aa	Predicted RBP	10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	COQ4	Q9Y3A0	265 aa		10.09	□□□□□ -0.79
CDK5RAP3-208	ENST00000578525	MIF4GD	A9UHW6	222 aa	Known RBP	10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	SPATA31C2	B4DYI2	1134 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	ZNF862	O60290	1169 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	SHOX2	O60902	331 aa	Predicted RBP	10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	DGAT1	O75907	488 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	SGPL1	O95470	568 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	FTL	P02792	175 aa	Predicted RBP	10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	GART	P22102	1010 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	CNGA1	P29973	690 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	ADSS	P30520	456 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	GPC3	P51654	580 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	GUCY2F	P51841	1108 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	HMGCS2	P54868	508 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	MAP2K1	Q02750	393 aa	Predicted RBP	10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	HLTF	Q14527	1009 aa	Known RBP eCLIP	10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	GNPTAB	Q3T906	1256 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	ANGEL2	Q5VTE6	544 aa	Known RBP	10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	MIS18BP1	Q6P0N0	1132 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	SLC39A4	Q6P5W5	647 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	LRRC31	Q6UY01	552 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	MAATS1	Q7Z4T9	603 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	USP37	Q86T82	979 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	IQCK	Q8N0W5	287 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	GPD1L	Q8N335	351 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	EPS8L1	Q8TE68	723 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	PARD3B	Q8TEW8	1205 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	SHC3	Q92529	594 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	SEMA4D	Q92854	862 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	KAT5	Q92993	513 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	ZKSCAN4	Q969J2	545 aa	Predicted RBP	10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	LRRC45	Q96CN5	670 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	SAAL1	Q96ER3	474 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	IFT74	Q96LB3	600 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	FBXL18	Q96ME1	805 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	KREMEN1	Q96MU8	473 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	NT5C1B	Q96P26	610 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	RPS6KC1	Q96S38	1066 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	PCDHB18P	Q96TA0	734 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	NAP1L3	Q99457	506 aa	Predicted RBP	10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	KIFC3	Q9BVG8	833 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	TEX13B	Q9BXU2	312 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	DDX47	Q9H0S4	455 aa	Known RBP	10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	JPH1	Q9HDC5	661 aa	Predicted RBP	10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	XPNPEP1	Q9NQW7	623 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	PDLIM7	Q9NR12	457 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	FAM114A2	Q9NRY5	505 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	CTTNBP2NL	Q9P2B4	639 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	SLC9A2	Q9UBY0	812 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	SEPT9	Q9UHD8	586 aa	Predicted RBP	10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	PPP2R3B	Q9Y5P8	575 aa		10.08	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	ZNF541	Q9H0D2	1346 aa		10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	WDR90	Q96KV7	1748 aa		10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	FAM187A	A6NFU0	413 aa		10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	SART1	O43290	800 aa	Known RBP	10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	RGS20	O76081	388 aa		10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	SUPT20HL2	P0C7V6	817 aa		10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	GZMA	P12544	262 aa		10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	ITGA4	P13612	1032 aa		10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	HSPA6	P17066	643 aa		10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	ECHS1	P30084	290 aa		10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	USP8	P40818	1118 aa		10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	ACTR2	P61160	394 aa		10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	SKOR1	P84550	965 aa		10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	POU5F1	Q01860	360 aa	Known RBP	10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	PRKCE	Q02156	737 aa		10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	CYP24A1	Q07973	514 aa		10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	TMEM132B	Q14DG7	1078 aa		10.07	□□□□□ -0.8
CDK5RAP3-208	ENST00000578525	SUPT20HL1	Q3ZLR7	823 aa		10.07	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms