RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 SCLT1Q96NL6 688 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 ACO2Q99798 780 aaKnown RBP16.69■□□□□ 0.26
SS18-206ENST00000577572 TUBGCP2Q9BSJ2 902 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 CELF4Q9BZC1 486 aaKnown RBP16.69■□□□□ 0.26
SS18-206ENST00000577572 FAM49AQ9H0Q0 323 aaPredicted RBP16.69■□□□□ 0.26
SS18-206ENST00000577572 RTN4Q9NQC3 1192 aaKnown RBP16.69■□□□□ 0.26
SS18-206ENST00000577572 IFNKQ9P0W0 207 aa16.69■□□□□ 0.26
SS18-206ENST00000577572 A0A0B4J269 797 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 LGALS16A8MUM7 142 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 ANKRD63C9JTQ0 380 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 N4BP3O15049 544 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 CLIC2O15247 247 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 CLDN3O15551 220 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 EXTL3O43909 919 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 AKAP3O75969 853 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 ADSSP30520 456 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 GJA8P48165 433 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 COPB1P53618 953 aaKnown RBP16.68■□□□□ 0.26
SS18-206ENST00000577572 MCL1Q07820 350 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 AMHR2Q16671 573 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 FAM26DQ5JW98 314 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 SLC39A4Q6P5W5 647 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 FAM186BQ8IYM0 893 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 GPD1LQ8N335 351 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 USP38Q8NB14 1042 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 U2AF1L4Q8WU68 220 aaKnown RBP16.68■□□□□ 0.26
SS18-206ENST00000577572 ZBTB10Q96DT7 871 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 CCDC51Q96ER9 411 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 PPP1R9BQ96SB3 815 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 PTPRHQ9HD43 1115 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 NOD1Q9Y239 953 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 TRPV2Q9Y5S1 764 aa16.68■□□□□ 0.26
SS18-206ENST00000577572 A0A1W2PQC6 194 aa16.67■□□□□ 0.26
SS18-206ENST00000577572 AP5Z1O43299 807 aa16.67■□□□□ 0.26
SS18-206ENST00000577572 STX10O60499 249 aa16.67■□□□□ 0.26
SS18-206ENST00000577572 ERLIN2O94905 339 aa16.67■□□□□ 0.26
SS18-206ENST00000577572 KRT13P13646 458 aa16.67■□□□□ 0.26
SS18-206ENST00000577572 ZNF200P98182 395 aaPredicted RBP16.67■□□□□ 0.26
SS18-206ENST00000577572 KIZQ2M2Z5 673 aa16.67■□□□□ 0.26
SS18-206ENST00000577572 VWA3BQ502W6 1294 aa16.67■□□□□ 0.26
SS18-206ENST00000577572 ATF7IP2Q5U623 682 aa16.67■□□□□ 0.26
SS18-206ENST00000577572 CEP135Q66GS9 1140 aa16.67■□□□□ 0.26
SS18-206ENST00000577572 MPZL3Q6UWV2 235 aa16.67■□□□□ 0.26
SS18-206ENST00000577572 CCDC155Q8N6L0 562 aa16.67■□□□□ 0.26
SS18-206ENST00000577572 CAGE1Q8TC20 777 aa16.67■□□□□ 0.26
SS18-206ENST00000577572 IQCDQ96DY2 449 aa16.67■□□□□ 0.26
SS18-206ENST00000577572 CBWD1Q9BRT8 395 aa16.67■□□□□ 0.26
SS18-206ENST00000577572 NOC4LQ9BVI4 516 aaKnown RBP16.67■□□□□ 0.26
SS18-206ENST00000577572 TARS2Q9BW92 718 aaKnown RBP16.67■□□□□ 0.26
SS18-206ENST00000577572 XPO4Q9C0E2 1151 aaKnown RBP16.67■□□□□ 0.26
SS18-206ENST00000577572 AGO2Q9UKV8 859 aaKnown RBP16.67■□□□□ 0.26
SS18-206ENST00000577572 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.67■□□□□ 0.26
SS18-206ENST00000577572 SIP14410 1827 aa16.67■□□□□ 0.26
SS18-206ENST00000577572 FRMPD3Q5JV73 1810 aa16.66■□□□□ 0.26
SS18-206ENST00000577572 A0A1B0GUA9 196 aa16.66■□□□□ 0.26
SS18-206ENST00000577572 ZNF233A6NK53 670 aa16.66■□□□□ 0.26
SS18-206ENST00000577572 PMM2O15305 246 aa16.66■□□□□ 0.26
SS18-206ENST00000577572 TFRCP02786 760 aaKnown RBP16.66■□□□□ 0.26
SS18-206ENST00000577572 MCF2P10911 925 aa16.66■□□□□ 0.26
SS18-206ENST00000577572 CYP2J2P51589 502 aa16.66■□□□□ 0.26
SS18-206ENST00000577572 SNX17Q15036 470 aa16.66■□□□□ 0.26
SS18-206ENST00000577572 FKBP15Q5T1M5 1219 aa16.66■□□□□ 0.26
SS18-206ENST00000577572 TMC2Q8TDI7 906 aa16.66■□□□□ 0.26
SS18-206ENST00000577572 NDST4Q9H3R1 872 aa16.66■□□□□ 0.26
SS18-206ENST00000577572 MINDY3Q9H8M7 445 aa16.66■□□□□ 0.26
SS18-206ENST00000577572 IMPACTQ9P2X3 320 aa16.66■□□□□ 0.26
SS18-206ENST00000577572 HTTP42858 3142 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 GOLGA6L6A8MZA4 724 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 ABLIM1O14639 778 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 OGTO15294 1046 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 P4HA2O15460 535 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 TSPAN1O60635 241 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 GTF2H1P32780 548 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 MGAT3Q09327 533 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 BFSP1Q12934 665 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 NOLC1Q14978 699 aaKnown RBP eCLIP16.65■□□□□ 0.26
SS18-206ENST00000577572 SURF1Q15526 300 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 SNRNP35Q16560 246 aaKnown RBP16.65■□□□□ 0.26
SS18-206ENST00000577572 TRIM71Q2Q1W2 868 aaKnown RBP16.65■□□□□ 0.26
SS18-206ENST00000577572 DCAF4L1Q3SXM0 396 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 ANKRD33Q7Z3H0 272 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 MFSD14AQ96MC6 490 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 TOX2Q96NM4 488 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 NAP1L5Q96NT1 182 aaPredicted RBP16.65■□□□□ 0.26
SS18-206ENST00000577572 ADPGKQ9BRR6 497 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 TCHPQ9BT92 498 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 MSTO1Q9BUK6 570 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 TMEM106CQ9BVX2 250 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 SENP6Q9GZR1 1112 aaPredicted RBP16.65■□□□□ 0.26
SS18-206ENST00000577572 CHST12Q9NRB3 414 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 ITIH6Q6UXX5 1313 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 CEP350Q5VT06 3117 aa16.65■□□□□ 0.26
SS18-206ENST00000577572 GTPBP10A4D1E9 387 aaKnown RBP16.64■□□□□ 0.25
SS18-206ENST00000577572 TLR3O15455 904 aaKnown RBP16.64■□□□□ 0.25
SS18-206ENST00000577572 N4BP1O75113 896 aaKnown RBP16.64■□□□□ 0.25
SS18-206ENST00000577572 IQCF3P0C7M6 154 aa16.64■□□□□ 0.25
SS18-206ENST00000577572 COL6A1P12109 1028 aa16.64■□□□□ 0.25
SS18-206ENST00000577572 CASP4P49662 377 aa16.64■□□□□ 0.25
SS18-206ENST00000577572 HSP90AA4PQ58FG1 418 aa16.64■□□□□ 0.25
SS18-206ENST00000577572 MIIPQ5JXC2 388 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms