RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 DAGLAQ9Y4D2 1042 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 SNX14Q9Y5W7 946 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 MROH7-TTC4A0A0A0MT08 1334 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 MANSC4A6NHS7 340 aaPredicted RBP7.68□□□□□ -1.18
VPS53-217ENST00000575100 B4E1Z4 1266 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 TNFRSF10CO14798 259 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 ULK1O75385 1050 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 SLITRK5O94991 958 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 CPA1P15085 419 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 PRIM2P49643 509 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 HAND2P61296 217 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 FKBP1AP62942 108 aaKnown RBP7.68□□□□□ -1.18
VPS53-217ENST00000575100 PLIN5Q00G26 463 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 KIAA0753Q2KHM9 967 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 GNPTABQ3T906 1256 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 RPS26P11Q5JNZ5 115 aaPredicted RBP7.68□□□□□ -1.18
VPS53-217ENST00000575100 OVOS1Q6IE37 1185 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 STOX1Q6ZVD7 989 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 MAP4K3Q8IVH8 894 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 PCYOX1LQ8NBM8 494 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 CLRN3Q8NCR9 226 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 SH3RF3Q8TEJ3 882 aaPredicted RBP7.68□□□□□ -1.18
VPS53-217ENST00000575100 BTN2A2Q8WVV5 523 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 ATG4CQ96DT6 458 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 VMP1Q96GC9 406 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 DSCC1Q9BVC3 393 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 APOL5Q9BWW9 433 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 ABCG4Q9H172 646 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 BHMT2Q9H2M3 363 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 GMIPQ9P107 970 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 SCAF8Q9UPN6 1271 aaKnown RBP7.68□□□□□ -1.18
VPS53-217ENST00000575100 TACC3Q9Y6A5 838 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 SLC4A4Q9Y6R1 1079 aa7.68□□□□□ -1.18
VPS53-217ENST00000575100 GAKO14976 1311 aa7.67□□□□□ -1.18
VPS53-217ENST00000575100 CYP2D7A0A087X1C5 515 aa7.67□□□□□ -1.18
VPS53-217ENST00000575100 HTR3BO95264 441 aa7.67□□□□□ -1.18
VPS53-217ENST00000575100 DHRS4L1P0CG22 281 aa7.67□□□□□ -1.18
VPS53-217ENST00000575100 KCNA2P16389 499 aa7.67□□□□□ -1.18
VPS53-217ENST00000575100 GRM5P41594 1212 aa7.67□□□□□ -1.18
VPS53-217ENST00000575100 BTDP43251 543 aa7.67□□□□□ -1.18
VPS53-217ENST00000575100 INHBEP58166 350 aa7.67□□□□□ -1.18
VPS53-217ENST00000575100 SART3Q15020 963 aaKnown RBP7.67□□□□□ -1.18
VPS53-217ENST00000575100 ZNF227Q86WZ6 799 aa7.67□□□□□ -1.18
VPS53-217ENST00000575100 KDF1Q8NAX2 398 aaPredicted RBP7.67□□□□□ -1.18
VPS53-217ENST00000575100 DIO2Q92813 273 aa7.67□□□□□ -1.18
VPS53-217ENST00000575100 MAP3K14Q99558 947 aa7.67□□□□□ -1.18
VPS53-217ENST00000575100 R3HDMLQ9H3Y0 253 aa7.67□□□□□ -1.18
VPS53-217ENST00000575100 UBN1Q9NPG3 1134 aa7.67□□□□□ -1.18
VPS53-217ENST00000575100 INCENPQ9NQS7 918 aa7.67□□□□□ -1.18
VPS53-217ENST00000575100 TMEM39AQ9NV64 488 aa7.67□□□□□ -1.18
VPS53-217ENST00000575100 MYH2Q9UKX2 1941 aa7.67□□□□□ -1.18
VPS53-217ENST00000575100 GPR75-ASB3A0A0A6YYF3 556 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 TRIM64A6NGJ6 449 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 TRIM64BA6NI03 449 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 FAM227AF5H4B4 570 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 EIF3FO00303 357 aaPredicted RBP7.66□□□□□ -1.18
VPS53-217ENST00000575100 SOD2P04179 222 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 ITGAVP06756 1048 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 ZBTB48P10074 688 aaPredicted RBP7.66□□□□□ -1.18
VPS53-217ENST00000575100 LSSP48449 732 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 MAN2A2P49641 1150 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 ZNF132P52740 706 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 SPRED3Q2MJR0 410 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 HECTD3Q5T447 861 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 APOBEC3HQ6NTF7 200 aaKnown RBP7.66□□□□□ -1.18
VPS53-217ENST00000575100 TMCO3Q6UWJ1 677 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 TMTC1Q8IUR5 882 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 FERMT2Q96AC1 680 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 UPF3BQ9BZI7 483 aaKnown RBP7.66□□□□□ -1.18
VPS53-217ENST00000575100 TMEM60Q9H2L4 133 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 TSPY26PQ9H489 355 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 ZNF576Q9H609 170 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 ITM2CQ9NQX7 267 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 VPS45Q9NRW7 570 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 CEP72Q9P209 647 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 GPN3Q9UHW5 284 aaPredicted RBP7.66□□□□□ -1.18
VPS53-217ENST00000575100 PPP1R9AQ9ULJ8 1098 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 GPC6Q9Y625 555 aaPredicted RBP7.66□□□□□ -1.18
VPS53-217ENST00000575100 MASP2O00187 686 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 XPOTO43592 962 aaKnown RBP7.66□□□□□ -1.18
VPS53-217ENST00000575100 MTHFD1P11586 935 aaKnown RBP7.66□□□□□ -1.18
VPS53-217ENST00000575100 KRT9P35527 623 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 CACNB3P54284 484 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 PTPN11Q06124 597 aaPredicted RBP7.66□□□□□ -1.18
VPS53-217ENST00000575100 PPP2R5CQ13362 524 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 MEA1Q16626 185 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 FKBP15Q5T1M5 1219 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 DMRTA1Q5VZB9 504 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 NLRC3Q7RTR2 1065 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 TBC1D10CQ8IV04 446 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 NRSN1Q8IZ57 195 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 HPS3Q969F9 1004 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 MAGEB10Q96LZ2 347 aaPredicted RBP7.66□□□□□ -1.18
VPS53-217ENST00000575100 TEKT5Q96M29 485 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 ASB2Q96Q27 587 aa7.66□□□□□ -1.18
VPS53-217ENST00000575100 DCP1AQ9NPI6 582 aaPredicted RBP7.66□□□□□ -1.18
VPS53-217ENST00000575100 ANGEL1Q9UNK9 670 aaKnown RBP7.66□□□□□ -1.18
VPS53-217ENST00000575100 RPAP1Q9BWH6 1393 aaPredicted RBP7.65□□□□□ -1.18
VPS53-217ENST00000575100 KLHL33A6NCF5 533 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 METTL12A8MUP2 240 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms