RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ZNF830Q96NB3 372 aaPredicted RBP8.7□□□□□ -1.02
VPS39-213ENST00000570062 DNAJC7Q99615 494 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 APBA2Q99767 749 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 KATNAL1Q9BW62 490 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 NFKBIZQ9BYH8 718 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 KCNF1Q9H3M0 494 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 MMRN2Q9H8L6 949 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 ABHD10Q9NUJ1 306 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 CEP72Q9P209 647 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 ARHGAP28Q9P2N2 729 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 CPA4Q9UI42 421 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 PAXBP1Q9Y5B6 917 aa8.7□□□□□ -1.02
VPS39-213ENST00000570062 IGKV6-21A0A0C4DH24 114 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 FAM155AB1AL88 458 aaPredicted RBP8.69□□□□□ -1.02
VPS39-213ENST00000570062 SLC16A4O15374 487 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 AKAP3O75969 853 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 SNAI1O95863 264 aaPredicted RBP8.69□□□□□ -1.02
VPS39-213ENST00000570062 GYPCP04921 128 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 CCDC175P0C221 793 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 GNAT1P11488 350 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 HOXD8P13378 290 aaPredicted RBP8.69□□□□□ -1.02
VPS39-213ENST00000570062 ATP4AP20648 1035 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 CNGA1P29973 690 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 HOXD13P35453 343 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 AP3M2P53677 418 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 TERF1P54274 439 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 TNFAIP2Q03169 654 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 ARHGAP1Q07960 439 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 NCBP1Q09161 790 aaKnown RBP8.69□□□□□ -1.02
VPS39-213ENST00000570062 LRMPQ12912 555 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 BFSP1Q12934 665 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 SURF1Q15526 300 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 PTPN14Q15678 1187 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 EXOC3L4Q17RC7 722 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 HSDL1Q3SXM5 330 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 ZC2HC1CQ53FD0 456 aaPredicted RBP8.69□□□□□ -1.02
VPS39-213ENST00000570062 MFSD14CQ5VZR4 134 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 MAEAQ7L5Y9 396 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 GLIS3Q8NEA6 775 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 CPLX3Q8WVH0 158 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 USP6NLQ92738 828 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 CFHR5Q9BXR6 569 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 KATNBL1Q9H079 304 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 AP5M1Q9H0R1 490 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 POLR3FQ9H1D9 316 aaPredicted RBP8.69□□□□□ -1.02
VPS39-213ENST00000570062 SPC25Q9HBM1 224 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 PRDM10Q9NQV6 1147 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 PLAGL2Q9UPG8 496 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 SIK3Q9Y2K2 1263 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 PTPRFP10586 1907 aa8.69□□□□□ -1.02
VPS39-213ENST00000570062 LOXHD1Q8IVV2 1947 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 TTC26A0AVF1 554 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 A6NJR5 290 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 ZNF233A6NK53 670 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 CCDC85CA6NKD9 419 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 H3BRB1 525 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 HNRNPDLO14979 420 aaKnown RBP8.68□□□□□ -1.02
VPS39-213ENST00000570062 ADCY3O60266 1144 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 ZEB2O60315 1214 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 PEX10O60683 326 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 OFD1O75665 1012 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 ARIH2O95376 493 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 MAP2K2P36507 400 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 LIG4P49917 911 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 ADKP55263 362 aaKnown RBP8.68□□□□□ -1.02
VPS39-213ENST00000570062 PLCB4Q15147 1175 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 MEA1Q16626 185 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 MAPK6Q16659 721 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 DEFB115Q30KQ5 88 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 SLC9C1Q4G0N8 1177 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 C10orf76Q5T2E6 689 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 TCERG1LQ5VWI1 586 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 ZNF662Q6ZS27 426 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 CCAR2Q8N163 923 aaKnown RBP8.68□□□□□ -1.02
VPS39-213ENST00000570062 EHBP1Q8NDI1 1231 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 OR6J1Q8NGC5 347 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 BICD1Q96G01 975 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 BORCS6Q96GS4 357 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 PRIMPOLQ96LW4 560 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 CCDC42Q96M95 316 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 FBXL18Q96ME1 805 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 CEP89Q96ST8 783 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 PCYT2Q99447 389 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 MRPL4Q9BYD3 311 aaKnown RBP8.68□□□□□ -1.02
VPS39-213ENST00000570062 TTYH3Q9C0H2 523 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 TUT1Q9H6E5 874 aaKnown RBP8.68□□□□□ -1.02
VPS39-213ENST00000570062 XPNPEP1Q9NQW7 623 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 HSPBP1Q9NZL4 362 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 MYO1AQ9UBC5 1043 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 ZHX1Q9UKY1 873 aaPredicted RBP8.68□□□□□ -1.02
VPS39-213ENST00000570062 PYCARDQ9ULZ3 195 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 STYXL1Q9Y6J8 313 aa8.68□□□□□ -1.02
VPS39-213ENST00000570062 SSU72P8A0A1W2PR75 194 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 RASSF10A6NK89 507 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 CLIC2O15247 247 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 EXTL3O43909 919 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 ZC3H11AO75152 810 aaKnown RBP eCLIP8.67□□□□□ -1.02
VPS39-213ENST00000570062 GFPT2O94808 682 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 LGALS2P05162 132 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 COL11A1P12107 1806 aaPredicted RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms