RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 K7ERI5 159 aa10.21□□□□□ -0.77
VPS35-211ENST00000569950 M0QZ92 97 aa10.21□□□□□ -0.77
VPS35-211ENST00000569950 EIF3DO15371 548 aaKnown RBP eCLIP10.21□□□□□ -0.77
VPS35-211ENST00000569950 SFPQP23246 707 aaKnown RBP eCLIP10.21□□□□□ -0.77
VPS35-211ENST00000569950 PMS1P54277 932 aaKnown RBP10.21□□□□□ -0.77
VPS35-211ENST00000569950 WDR5P61964 334 aaKnown RBP10.21□□□□□ -0.77
VPS35-211ENST00000569950 DEFB103AP81534 67 aa10.21□□□□□ -0.77
VPS35-211ENST00000569950 MLLT1Q03111 559 aaPredicted RBP10.21□□□□□ -0.77
VPS35-211ENST00000569950 PAK2Q13177 524 aa10.21□□□□□ -0.77
VPS35-211ENST00000569950 PPIGQ13427 754 aaKnown RBP eCLIP10.21□□□□□ -0.774e-7■□□□□ 10.9
VPS35-211ENST00000569950 PCBP1Q15365 356 aaKnown RBP eCLIP10.21□□□□□ -0.77
VPS35-211ENST00000569950 SHHQ15465 462 aa10.21□□□□□ -0.77
VPS35-211ENST00000569950 MAPK6Q16659 721 aa10.21□□□□□ -0.77
VPS35-211ENST00000569950 FAM109BQ6ICB4 259 aaPredicted RBP10.21□□□□□ -0.77
VPS35-211ENST00000569950 CATSPER4Q7RTX7 472 aa10.21□□□□□ -0.77
VPS35-211ENST00000569950 HERVK_113Q902F9 699 aa10.21□□□□□ -0.77
VPS35-211ENST00000569950 HVCN1Q96D96 273 aa10.21□□□□□ -0.77
VPS35-211ENST00000569950 ADAM2Q99965 735 aa10.21□□□□□ -0.77
VPS35-211ENST00000569950 FUCA2Q9BTY2 467 aa10.21□□□□□ -0.77
VPS35-211ENST00000569950 CDT1Q9H211 546 aa10.21□□□□□ -0.77
VPS35-211ENST00000569950 RGS18Q9NS28 235 aa10.21□□□□□ -0.77
VPS35-211ENST00000569950 PRMT7Q9NVM4 692 aaPredicted RBP10.21□□□□□ -0.77
VPS35-211ENST00000569950 TNFSF13BQ9Y275 285 aa10.21□□□□□ -0.77
VPS35-211ENST00000569950 REV3LO60673 3130 aa10.21□□□□□ -0.78
VPS35-211ENST00000569950 BIN1O00499 593 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 GPR182O15218 404 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 ZNF623O75123 536 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 UBE4BO95155 1302 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 GCNT3O95395 438 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 PFKMP08237 780 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 BMP8BP34820 402 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 PRCPP42785 496 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 SMTNP53814 917 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 WNT7BP56706 349 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 NFX1Q12986 1120 aaKnown RBP10.2□□□□□ -0.78
VPS35-211ENST00000569950 PSMD2Q13200 908 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 PRPF4BQ13523 1007 aaKnown RBP10.2□□□□□ -0.78
VPS35-211ENST00000569950 ZBTB41Q5SVQ8 909 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 ZNF658Q5TYW1 1059 aaPredicted RBP10.2□□□□□ -0.78
VPS35-211ENST00000569950 ISM2Q6H9L7 571 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 ZPBP2Q6X784 338 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 TMCO2Q7Z6W1 182 aaPredicted RBP10.2□□□□□ -0.78
VPS35-211ENST00000569950 MRPL10Q7Z7H8 261 aaKnown RBP10.2□□□□□ -0.78
VPS35-211ENST00000569950 NLRC5Q86WI3 1866 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 ZBTB8OSQ8IWT0 167 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 TMEM192Q8IY95 271 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 ADSSL1Q8N142 457 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 GUF1Q8N442 669 aaKnown RBP10.2□□□□□ -0.78
VPS35-211ENST00000569950 CEP120Q8N960 986 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 SEPT8Q92599 483 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 APBB2Q92870 758 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 SMARCE1Q969G3 411 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 SCLT1Q96NL6 688 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 GZF1Q9H116 711 aaPredicted RBP10.2□□□□□ -0.78
VPS35-211ENST00000569950 SEMA6BQ9H3T3 888 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 CHST12Q9NRB3 414 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 EXOC1Q9NV70 894 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 PRKAG2Q9UGJ0 569 aa10.2□□□□□ -0.78
VPS35-211ENST00000569950 PIN4Q9Y237 131 aaKnown RBP10.2□□□□□ -0.78
VPS35-211ENST00000569950 ATG2AQ2TAZ0 1938 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 A0A0B4J269 797 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 A0A0U1RQF3 1178 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 ABHD14A-ACY1A0A1B0GW23 586 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 B4GALT3O60512 393 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 TOM1L1O75674 476 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 LINC00271P0C7V0 271 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 SCP2P22307 547 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 AXLP30530 894 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 AFF1P51825 1210 aaKnown RBP10.19□□□□□ -0.78
VPS35-211ENST00000569950 MCL1Q07820 350 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 ALCAMQ13740 583 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 DPCR1Q3MIW9 517 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 CCDC183Q5T5S1 534 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 ATF7IP2Q5U623 682 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 CAVIN1Q6NZI2 390 aaKnown RBP10.19□□□□□ -0.78
VPS35-211ENST00000569950 CRELD2Q6UXH1 353 aaPredicted RBP10.19□□□□□ -0.78
VPS35-211ENST00000569950 AGMOQ6ZNB7 445 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 OTOP2Q7RTS6 562 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 ECHDC2Q86YB7 292 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 ZC3H3Q8IXZ2 948 aaKnown RBP10.19□□□□□ -0.78
VPS35-211ENST00000569950 RPUSD2Q8IZ73 545 aaKnown RBP10.19□□□□□ -0.78
VPS35-211ENST00000569950 SLC17A8Q8NDX2 589 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 GSTCDQ8NEC7 633 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 TMEM174Q8WUU8 243 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 CBWD1Q9BRT8 395 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 MRPL4Q9BYD3 311 aaKnown RBP10.19□□□□□ -0.78
VPS35-211ENST00000569950 NXF3Q9H4D5 531 aaKnown RBP10.19□□□□□ -0.78
VPS35-211ENST00000569950 FAM105AQ9NUU6 356 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 MAPK8IP1Q9UQF2 711 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 HES2Q9Y543 173 aa10.19□□□□□ -0.78
VPS35-211ENST00000569950 H0YCG3 227 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 INPPL1O15357 1258 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 BAIAP3O94812 1187 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 ERLIN2O94905 339 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 ARHGEF15O94989 841 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 SMC2O95347 1197 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 FGBP02675 491 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 ADRB2P07550 413 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 GATMP50440 423 aa10.18□□□□□ -0.78
VPS35-211ENST00000569950 MCCD1P59942 119 aaPredicted RBP10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms