RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 MUTP22033 750 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 CCND1P24385 295 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 EDNRBP24530 442 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 ITGB8P26012 769 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 ARNTP27540 789 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 MAPK4P31152 587 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 KRT20P35900 424 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 ADH7P40394 386 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 PMS1P54277 932 aaKnown RBP3.45□□□□□ -1.86
VPS35-209ENST00000568642 GFRA1P56159 465 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 SNX16P57768 344 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 RAC1P63000 192 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 MOGSQ13724 837 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 CNGB1Q14028 1251 aaPredicted RBP3.45□□□□□ -1.86
VPS35-209ENST00000568642 KIAA0753Q2KHM9 967 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 GNPTABQ3T906 1256 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 CCDC38Q502W7 563 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 PRR16Q569H4 304 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 FAM26FQ5R3K3 315 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 GJC2Q5T442 439 aaPredicted RBP3.45□□□□□ -1.86
VPS35-209ENST00000568642 HECTD3Q5T447 861 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 ANKRD45Q5TZF3 282 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 FAAH2Q6GMR7 532 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 LLGL2Q6P1M3 1020 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 NPNTQ6UXI9 565 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 LBX2Q6XYB7 198 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 SMIM5Q71RC9 77 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 VN1R5Q7Z5H4 357 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 DPP9Q86TI2 863 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 LURAP1LQ8IV03 231 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 FMR1NBQ8N0W7 255 aaPredicted RBP3.45□□□□□ -1.86
VPS35-209ENST00000568642 ESX1Q8N693 406 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 ARL6IP6Q8N6S5 226 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 TEX9Q8N6V9 391 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 ZMIZ2Q8NF64 920 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 OR8H1Q8NGG4 311 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 PHKBQ93100 1093 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 GUCD1Q96NT3 240 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 TSGA13Q96PP4 275 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 SPAG5Q96R06 1193 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 SLC30A3Q99726 388 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 HAUS7Q99871 368 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 GDF15Q99988 308 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 MAGEH1Q9H213 219 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 GHITMQ9H3K2 345 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 TRPV4Q9HBA0 871 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 ASH1LQ9NR48 2969 aaKnown RBP3.45□□□□□ -1.86
VPS35-209ENST00000568642 THG1LQ9NWX6 298 aaKnown RBP3.45□□□□□ -1.86
VPS35-209ENST00000568642 PIM2Q9P1W9 311 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 TBK1Q9UHD2 729 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 ZNF281Q9Y2X9 895 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 TACC3Q9Y6A5 838 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 C5orf42Q9H799 3197 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 KANK1Q14678 1352 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 CCNB3Q8WWL7 1395 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 COL5A2P05997 1499 aaPredicted RBP3.45□□□□□ -1.86
VPS35-209ENST00000568642 USP34Q70CQ2 3546 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 MYO9BQ13459 2157 aa3.45□□□□□ -1.86
VPS35-209ENST00000568642 GCN1Q92616 2671 aaKnown RBP3.45□□□□□ -1.86
VPS35-209ENST00000568642 IRS2Q9Y4H2 1338 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 FER1L6Q2WGJ9 1857 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 PPLO60437 1756 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 A0A087X0M5 115 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 A0A1B0GX30 115 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 LCHNA4D1U4 455 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 SMTNL1A8MU46 457 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 ARVCFO00192 962 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 SLC7A4O43246 635 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 LILRB5O75023 590 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 USP2O75604 605 aaPredicted RBP3.44□□□□□ -1.86
VPS35-209ENST00000568642 OFD1O75665 1012 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 URI1O94763 535 aaPredicted RBP3.44□□□□□ -1.86
VPS35-209ENST00000568642 CFBP00751 764 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 IDEP14735 1019 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 ELF1P32519 619 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 STAT1P42224 750 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 NOP2P46087 812 aaKnown RBP3.44□□□□□ -1.86
VPS35-209ENST00000568642 MTNR1BP49286 362 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 SEPHS1P49903 392 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 ARL4CP56559 192 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 HSD17B7P56937 341 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 SESN3P58005 492 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 ALDH6A1Q02252 535 aaKnown RBP3.44□□□□□ -1.86
VPS35-209ENST00000568642 NHLH1Q02575 133 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 BTKQ06187 659 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 NOGQ13253 232 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 PPP2R5BQ15173 497 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 TAF5Q15542 800 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 FAM110CQ1W6H9 321 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 UVSSAQ2YD98 709 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 FAM209BQ5JX69 171 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 TMEM31Q5JXX7 168 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 RNF220Q5VTB9 566 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 SCARA3Q6AZY7 606 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 CYFIP1Q7L576 1253 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 OVCH1Q7RTY7 1134 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 RAB44Q7Z6P3 723 aaPredicted RBP3.44□□□□□ -1.86
VPS35-209ENST00000568642 RPAINQ86UA6 219 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 SLC51AQ86UW1 340 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 EGFL6Q8IUX8 553 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms