RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 SRGAP2CP0DJJ0 459 aa15.43■□□□□ 0.06
CLN3-235ENST00000568497 RFX1P22670 979 aa15.43■□□□□ 0.06
CLN3-235ENST00000568497 CA8P35219 290 aa15.43■□□□□ 0.06
CLN3-235ENST00000568497 RARRES1P49788 294 aa15.43■□□□□ 0.06
CLN3-235ENST00000568497 GPC3P51654 580 aa15.43■□□□□ 0.06
CLN3-235ENST00000568497 POLGP54098 1239 aaPredicted RBP15.43■□□□□ 0.06
CLN3-235ENST00000568497 ITIH3Q06033 890 aa15.43■□□□□ 0.06
CLN3-235ENST00000568497 ST3GAL2Q16842 350 aa15.43■□□□□ 0.06
CLN3-235ENST00000568497 RSPO4Q2I0M5 234 aaPredicted RBP15.43■□□□□ 0.06
CLN3-235ENST00000568497 IER5Q5VY09 327 aa15.43■□□□□ 0.06
CLN3-235ENST00000568497 BRAPQ7Z569 592 aa15.43■□□□□ 0.06
CLN3-235ENST00000568497 IGSF22Q8N9C0 903 aa15.43■□□□□ 0.06
CLN3-235ENST00000568497 COLGALT1Q8NBJ5 622 aa15.43■□□□□ 0.06
CLN3-235ENST00000568497 NLRP7Q8WX94 980 aa15.43■□□□□ 0.06
CLN3-235ENST00000568497 DDX19AQ9NUU7 478 aaKnown RBP15.43■□□□□ 0.06
CLN3-235ENST00000568497 HCSTQ9UBK5 93 aa15.43■□□□□ 0.06
CLN3-235ENST00000568497 PUF60Q9UHX1 559 aaKnown RBP15.43■□□□□ 0.06
CLN3-235ENST00000568497 DBR1Q9UK59 544 aaKnown RBP15.43■□□□□ 0.06
CLN3-235ENST00000568497 CEP131Q9UPN4 1083 aa15.43■□□□□ 0.06
CLN3-235ENST00000568497 WDR87Q6ZQQ6 2873 aa15.42■□□□□ 0.06
CLN3-235ENST00000568497 IGKV6-21A0A0C4DH24 114 aa15.42■□□□□ 0.06
CLN3-235ENST00000568497 NPHP3-ACAD11A0A0J9YXS1 232 aa15.42■□□□□ 0.06
CLN3-235ENST00000568497 HIDE1A8MVS5 230 aa15.42■□□□□ 0.06
CLN3-235ENST00000568497 MAGEB2O15479 319 aa15.42■□□□□ 0.06
CLN3-235ENST00000568497 ZSCAN22P10073 491 aaPredicted RBP15.42■□□□□ 0.06
CLN3-235ENST00000568497 MTHFRP42898 656 aa15.42■□□□□ 0.06
CLN3-235ENST00000568497 CACNB1Q02641 598 aaPredicted RBP15.42■□□□□ 0.06
CLN3-235ENST00000568497 RAD51AP2Q09MP3 1159 aa15.42■□□□□ 0.06
CLN3-235ENST00000568497 DHX8Q14562 1220 aaKnown RBP15.42■□□□□ 0.06
CLN3-235ENST00000568497 LONRF3Q496Y0 759 aa15.42■□□□□ 0.06
CLN3-235ENST00000568497 FAM43BQ6ZT52 329 aaPredicted RBP15.42■□□□□ 0.06
CLN3-235ENST00000568497 PRPF31Q8WWY3 499 aaKnown RBP15.42■□□□□ 0.06
CLN3-235ENST00000568497 RIN2Q8WYP3 895 aaPredicted RBP15.42■□□□□ 0.06
CLN3-235ENST00000568497 RUBCNQ92622 972 aa15.42■□□□□ 0.06
CLN3-235ENST00000568497 MAP7D2Q96T17 732 aa15.42■□□□□ 0.06
CLN3-235ENST00000568497 POLR3CQ9BUI4 534 aaPredicted RBP15.42■□□□□ 0.06
CLN3-235ENST00000568497 ADAM7Q9H2U9 754 aa15.42■□□□□ 0.06
CLN3-235ENST00000568497 ERVK-5Q9HDB9 667 aa15.42■□□□□ 0.06
CLN3-235ENST00000568497 ST3GAL5Q9UNP4 418 aa15.42■□□□□ 0.06
CLN3-235ENST00000568497 LZTS1Q9Y250 596 aa15.42■□□□□ 0.06
CLN3-235ENST00000568497 SPTBN2O15020 2390 aa15.41■□□□□ 0.06
CLN3-235ENST00000568497 RPS6KA5O75582 802 aa15.41■□□□□ 0.06
CLN3-235ENST00000568497 F13A1P00488 732 aa15.41■□□□□ 0.06
CLN3-235ENST00000568497 SSBP05455 408 aaKnown RBP eCLIP15.41■□□□□ 0.06
CLN3-235ENST00000568497 ORC2Q13416 577 aaPredicted RBP15.41■□□□□ 0.06
CLN3-235ENST00000568497 KARSQ15046 597 aaKnown RBP15.41■□□□□ 0.06
CLN3-235ENST00000568497 RARS2Q5T160 578 aaKnown RBP15.41■□□□□ 0.06
CLN3-235ENST00000568497 ZC3H14Q6PJT7 736 aaKnown RBP15.41■□□□□ 0.06
CLN3-235ENST00000568497 ZDHHC14Q8IZN3 488 aa15.41■□□□□ 0.06
CLN3-235ENST00000568497 SIX5Q8N196 739 aa15.41■□□□□ 0.06
CLN3-235ENST00000568497 PLCD3Q8N3E9 789 aa15.41■□□□□ 0.06
CLN3-235ENST00000568497 DCLK2Q8N568 766 aa15.41■□□□□ 0.06
CLN3-235ENST00000568497 BSNDQ8WZ55 320 aa15.41■□□□□ 0.06
CLN3-235ENST00000568497 MRPS27Q92552 414 aaKnown RBP15.41■□□□□ 0.06
CLN3-235ENST00000568497 TNPO1Q92973 898 aaKnown RBP15.41■□□□□ 0.06
CLN3-235ENST00000568497 EPSTI1Q96J88 318 aa15.41■□□□□ 0.06
CLN3-235ENST00000568497 KIFC3Q9BVG8 833 aa15.41■□□□□ 0.06
CLN3-235ENST00000568497 PANK2Q9BZ23 570 aa15.41■□□□□ 0.06
CLN3-235ENST00000568497 CSRNP2Q9H175 543 aa15.41■□□□□ 0.06
CLN3-235ENST00000568497 POLR3FQ9H1D9 316 aaPredicted RBP15.41■□□□□ 0.06
CLN3-235ENST00000568497 BHMT2Q9H2M3 363 aa15.41■□□□□ 0.06
CLN3-235ENST00000568497 DHX33Q9H6R0 707 aaKnown RBP15.41■□□□□ 0.06
CLN3-235ENST00000568497 MINDY3Q9H8M7 445 aa15.41■□□□□ 0.06
CLN3-235ENST00000568497 TUFT1Q9NNX1 390 aa15.41■□□□□ 0.06
CLN3-235ENST00000568497 FBXO2Q9UK22 296 aaPredicted RBP15.41■□□□□ 0.06
CLN3-235ENST00000568497 FNDC1Q4ZHG4 1894 aaPredicted RBP15.41■□□□□ 0.06
CLN3-235ENST00000568497 MYH15Q9Y2K3 1946 aa15.41■□□□□ 0.06
CLN3-235ENST00000568497 NPR3P17342 541 aa15.4■□□□□ 0.06
CLN3-235ENST00000568497 RPA1P27694 616 aa15.4■□□□□ 0.06
CLN3-235ENST00000568497 SARSP49591 514 aaKnown RBP15.4■□□□□ 0.06
CLN3-235ENST00000568497 PLCB3Q01970 1234 aa15.4■□□□□ 0.06
CLN3-235ENST00000568497 DNM1Q05193 864 aaKnown RBP15.4■□□□□ 0.06
CLN3-235ENST00000568497 TMC7Q7Z402 723 aa15.4■□□□□ 0.06
CLN3-235ENST00000568497 ERMNQ8TAM6 284 aa15.4■□□□□ 0.06
CLN3-235ENST00000568497 CCDC43Q96MW1 224 aaKnown RBP15.4■□□□□ 0.06
CLN3-235ENST00000568497 MTRQ99707 1265 aa15.4■□□□□ 0.06
CLN3-235ENST00000568497 RUSC1Q9BVN2 902 aa15.4■□□□□ 0.06
CLN3-235ENST00000568497 NGRNQ9NPE2 291 aaKnown RBP15.4■□□□□ 0.06
CLN3-235ENST00000568497 TYW1Q9NV66 732 aaKnown RBP15.4■□□□□ 0.06
CLN3-235ENST00000568497 HCFC2Q9Y5Z7 792 aa15.4■□□□□ 0.06
CLN3-235ENST00000568497 ZFHX4Q86UP3 3567 aa15.4■□□□□ 0.06
CLN3-235ENST00000568497 ARHGEF35A5YM69 484 aa15.39■□□□□ 0.05
CLN3-235ENST00000568497 LYPLA2O95372 231 aa15.39■□□□□ 0.05
CLN3-235ENST00000568497 LAG3P18627 525 aa15.39■□□□□ 0.05
CLN3-235ENST00000568497 LIG1P18858 919 aa15.39■□□□□ 0.05
CLN3-235ENST00000568497 GLRA2P23416 452 aa15.39■□□□□ 0.05
CLN3-235ENST00000568497 TMOD1P28289 359 aa15.39■□□□□ 0.05
CLN3-235ENST00000568497 CRYBB1P53674 252 aaPredicted RBP15.39■□□□□ 0.05
CLN3-235ENST00000568497 LAMTOR4Q0VGL1 99 aa15.39■□□□□ 0.05
CLN3-235ENST00000568497 FAM102BQ5T8I3 360 aa15.39■□□□□ 0.05
CLN3-235ENST00000568497 KRT79Q5XKE5 535 aa15.39■□□□□ 0.05
CLN3-235ENST00000568497 PADI6Q6TGC4 694 aa15.39■□□□□ 0.05
CLN3-235ENST00000568497 OTUD6AQ7L8S5 288 aa15.39■□□□□ 0.05
CLN3-235ENST00000568497 CABP7Q86V35 215 aa15.39■□□□□ 0.05
CLN3-235ENST00000568497 CDR2LQ86X02 465 aaPredicted RBP15.39■□□□□ 0.05
CLN3-235ENST00000568497 NME8Q8N427 588 aa15.39■□□□□ 0.05
CLN3-235ENST00000568497 ANKEF1Q9NU02 776 aa15.39■□□□□ 0.05
CLN3-235ENST00000568497 RNF216Q9NWF9 866 aaPredicted RBP15.39■□□□□ 0.05
CLN3-235ENST00000568497 COL4A3BPQ9Y5P4 624 aa15.39■□□□□ 0.05
CLN3-235ENST00000568497 MAP1BP46821 2468 aaKnown RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms