RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 MTCH2Q9Y6C9 303 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 ZMYM2Q9UBW7 1377 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 SCN1AP35498 2009 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 TBKBP1A7MCY6 615 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 TISP43B9A030 160 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 F8W810 466 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 PTGESO14684 152 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 GRM6O15303 877 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 DDHD2O94830 711 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 NPTXRO95502 500 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 EOMESO95936 686 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 EFEMP2O95967 443 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 ITGB1P05556 798 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 IBSPP21815 317 aaPredicted RBP10.86□□□□□ -0.67
CLN3-220ENST00000566040 IGFBP6P24592 240 aaPredicted RBP10.86□□□□□ -0.67
CLN3-220ENST00000566040 NMT1P30419 496 aaKnown RBP10.86□□□□□ -0.67
CLN3-220ENST00000566040 AXLP30530 894 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 HOXD13P35453 343 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 BMPR1AP36894 532 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 KCNA1Q09470 495 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 BTG3Q14201 252 aaPredicted RBP10.86□□□□□ -0.67
CLN3-220ENST00000566040 ODR4Q5SWX8 454 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 RRAGBQ5VZM2 374 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 CNNM4Q6P4Q7 775 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 NOTUMQ6P988 496 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 SFR1Q86XK3 245 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 ZNF280BQ86YH2 543 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 GRAMD1CQ8IYS0 662 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 FIBCD1Q8N539 461 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 DDX12PQ92771 950 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 HPS3Q969F9 1004 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 CCDC51Q96ER9 411 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 CDK5RAP3Q96JB5 506 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 ZBTB45Q96K62 511 aaPredicted RBP10.86□□□□□ -0.67
CLN3-220ENST00000566040 DRC1Q96MC2 740 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 ZFP42Q96MM3 310 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 TARS2Q9BW92 718 aaKnown RBP10.86□□□□□ -0.67
CLN3-220ENST00000566040 CDT1Q9H211 546 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 TMEM134Q9H6X4 195 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 TSHZ2Q9NRE2 1034 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 TYW1Q9NV66 732 aaKnown RBP10.86□□□□□ -0.67
CLN3-220ENST00000566040 TBC1D13Q9NVG8 400 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 DACT1Q9NYF0 836 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 DNAJB4Q9UDY4 337 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 PCDHB7Q9Y5E2 793 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 PCDHGC5Q9Y5F6 944 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 DENND4AQ7Z401 1863 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 C2orf16Q68DN1 1984 aa10.86□□□□□ -0.67
CLN3-220ENST00000566040 MUC3AQ02505 3323 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 H3BNC9 293 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 KLRC4O43908 158 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 ERLIN2O94905 339 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 PIGRP01833 764 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 STAG3L1P0CL83 205 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 PFKFB1P16118 471 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 ZSCAN20P17040 1043 aaPredicted RBP10.85□□□□□ -0.67
CLN3-220ENST00000566040 STAT6P42226 847 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 ME1P48163 572 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 RAB27AP51159 221 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 KRT85P78386 507 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 DSC1Q08554 894 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 PPP2R5AQ15172 486 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 ZC2HC1CQ53FD0 456 aaPredicted RBP10.85□□□□□ -0.67
CLN3-220ENST00000566040 SLC27A1Q6PCB7 646 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 DYMQ7RTS9 669 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 COLGALT1Q8NBJ5 622 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 RNF169Q8NCN4 708 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 DEPTORQ8TB45 409 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 DHX58Q96C10 678 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 TRIM9Q9C026 710 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 C2orf40Q9H1Z8 148 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 ST6GALNAC4Q9H4F1 302 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 C17orf75Q9HAS0 396 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 KMT5AQ9NQR1 393 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 PRDM6Q9NQX0 595 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 CACNG4Q9UBN1 327 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 TNFSF13BQ9Y275 285 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 MTCL1Q9Y4B5 1905 aaKnown RBP10.85□□□□□ -0.67
CLN3-220ENST00000566040 BDP1A6H8Y1 2624 aa10.85□□□□□ -0.67
CLN3-220ENST00000566040 A0A1B0GVL5 298 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 ARL5CA6NH57 179 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 CCDC169A6NNP5 214 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 ANKRD63C9JTQ0 380 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 POLR2DO15514 142 aaKnown RBP10.84□□□□□ -0.67
CLN3-220ENST00000566040 PRR29P0C7W0 189 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 CMA1P23946 247 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 AKAP5P24588 427 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 CTNNB1P35222 781 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 IRS1P35568 1242 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 MLH1P40692 756 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 NDUFA8P51970 172 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 EFNA5P52803 228 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 GTF2BQ00403 316 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 DMP1Q13316 513 aaPredicted RBP10.84□□□□□ -0.67
CLN3-220ENST00000566040 PRPF4BQ13523 1007 aaKnown RBP10.84□□□□□ -0.67
CLN3-220ENST00000566040 COL19A1Q14993 1142 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 MAPK6Q16659 721 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 ZBTB41Q5SVQ8 909 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 ATF7IP2Q5U623 682 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 ADALQ6DHV7 355 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms