RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 FBXL6Q8N531 539 aa20.8■□□□□ 0.92
CLN3-218ENST00000565688 ASAP3Q8TDY4 903 aa20.8■□□□□ 0.92
CLN3-218ENST00000565688 PRRX2Q99811 253 aa20.8■□□□□ 0.92
CLN3-218ENST00000565688 EIF2AQ9BY44 585 aaKnown RBP20.8■□□□□ 0.92
CLN3-218ENST00000565688 TRIM6Q9C030 488 aaPredicted RBP20.8■□□□□ 0.92
CLN3-218ENST00000565688 MRPL17Q9NRX2 175 aaKnown RBP20.8■□□□□ 0.92
CLN3-218ENST00000565688 SSX2IPQ9Y2D8 614 aa20.8■□□□□ 0.92
CLN3-218ENST00000565688 ARL5CA6NH57 179 aa20.79■□□□□ 0.92
CLN3-218ENST00000565688 WNT7AO00755 349 aa20.79■□□□□ 0.92
CLN3-218ENST00000565688 NR1I2O75469 434 aa20.79■□□□□ 0.92
CLN3-218ENST00000565688 GLRA2P23416 452 aa20.79■□□□□ 0.92
CLN3-218ENST00000565688 NHLH1Q02575 133 aa20.79■□□□□ 0.92
CLN3-218ENST00000565688 PIGOQ8TEQ8 1089 aa20.79■□□□□ 0.92
CLN3-218ENST00000565688 CPB2Q96IY4 423 aa20.79■□□□□ 0.92
CLN3-218ENST00000565688 TUFT1Q9NNX1 390 aa20.79■□□□□ 0.92
CLN3-218ENST00000565688 CDH22Q9UJ99 828 aa20.79■□□□□ 0.92
CLN3-218ENST00000565688 LIMCH1Q9UPQ0 1083 aa20.79■□□□□ 0.92
CLN3-218ENST00000565688 GIT1Q9Y2X7 761 aa20.79■□□□□ 0.92
CLN3-218ENST00000565688 POTEMA6NI47 508 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 SOD2P04179 222 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 KLRC2P26717 231 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 MCM7P33993 719 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 MLH1P40692 756 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 ORC2Q13416 577 aaPredicted RBP20.78■□□□□ 0.92
CLN3-218ENST00000565688 AMHR2Q16671 573 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 COLGALT2Q8IYK4 626 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 UBALD2Q8IYN6 164 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 C12orf76Q8N812 135 aaPredicted RBP20.78■□□□□ 0.92
CLN3-218ENST00000565688 MCPH1Q8NEM0 835 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 ASIC4Q96FT7 647 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 KLHL5Q96PQ7 755 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 GAD1Q99259 594 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 LLPHQ9BRT6 129 aaKnown RBP20.78■□□□□ 0.92
CLN3-218ENST00000565688 POLR3FQ9H1D9 316 aaPredicted RBP20.78■□□□□ 0.92
CLN3-218ENST00000565688 RNF39Q9H2S5 420 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 SFXN1Q9H9B4 322 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 DBR1Q9UK59 544 aaKnown RBP20.78■□□□□ 0.92
CLN3-218ENST00000565688 SORCS3Q9UPU3 1222 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 USTQ9Y2C2 406 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 ZDBF2Q9HCK1 2354 aa20.78■□□□□ 0.92
CLN3-218ENST00000565688 ZMYM2Q9UBW7 1377 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 SPDYE4A6NLX3 237 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 C2CD4DB7Z1M9 353 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 USO1O60763 962 aaKnown RBP20.77■□□□□ 0.92
CLN3-218ENST00000565688 LILRB3O75022 631 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 SSBP05455 408 aaKnown RBP eCLIP20.77■□□□□ 0.92
CLN3-218ENST00000565688 URODP06132 367 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 CNPP09543 421 aaKnown RBP20.77■□□□□ 0.92
CLN3-218ENST00000565688 SPATA31C1P0DKV0 1188 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 ARF4P18085 180 aaPredicted RBP20.77■□□□□ 0.92
CLN3-218ENST00000565688 OR1G1P47890 313 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 CLCN4P51793 760 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 DSC1Q08554 894 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 MTMR3Q13615 1198 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 SLC27A1Q6PCB7 646 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 PLCD3Q8N3E9 789 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 TDRD5Q8NAT2 981 aaKnown RBP20.77■□□□□ 0.92
CLN3-218ENST00000565688 KREMEN2Q8NCW0 462 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 ERMNQ8TAM6 284 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 C8orf76Q96K31 380 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 NACC1Q96RE7 527 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 TMEM60Q9H2L4 133 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 PRG3Q9Y2Y8 225 aaPredicted RBP20.77■□□□□ 0.92
CLN3-218ENST00000565688 HES2Q9Y543 173 aa20.77■□□□□ 0.92
CLN3-218ENST00000565688 WEE2P0C1S8 567 aa20.76■□□□□ 0.91
CLN3-218ENST00000565688 ATP2B1P20020 1258 aa20.76■□□□□ 0.91
CLN3-218ENST00000565688 ST3GAL1Q11201 340 aa20.76■□□□□ 0.91
CLN3-218ENST00000565688 ELMSAN1Q6PJG2 1045 aa20.76■□□□□ 0.91
CLN3-218ENST00000565688 CATSPER3Q86XQ3 398 aa20.76■□□□□ 0.91
CLN3-218ENST00000565688 ZDHHC14Q8IZN3 488 aa20.76■□□□□ 0.91
CLN3-218ENST00000565688 POLR3CQ9BUI4 534 aaPredicted RBP20.76■□□□□ 0.91
CLN3-218ENST00000565688 HERC2P3Q9BVR0 1158 aa20.76■□□□□ 0.91
CLN3-218ENST00000565688 FOXP1Q9H334 677 aaPredicted RBP20.76■□□□□ 0.91
CLN3-218ENST00000565688 MARCH5Q9NX47 278 aa20.76■□□□□ 0.91
CLN3-218ENST00000565688 DPP7Q9UHL4 492 aa20.76■□□□□ 0.91
CLN3-218ENST00000565688 A0A1B0GUA9 196 aa20.75■□□□□ 0.91
CLN3-218ENST00000565688 LRRIQ4A6NIV6 560 aa20.75■□□□□ 0.91
CLN3-218ENST00000565688 ADH1AP07327 375 aa20.75■□□□□ 0.91
CLN3-218ENST00000565688 SCNN1GP51170 649 aa20.75■□□□□ 0.91
CLN3-218ENST00000565688 GUCY1B3Q02153 619 aa20.75■□□□□ 0.91
CLN3-218ENST00000565688 TMC5Q6UXY8 1006 aa20.75■□□□□ 0.91
CLN3-218ENST00000565688 GPR149Q86SP6 731 aa20.75■□□□□ 0.91
CLN3-218ENST00000565688 ALYREFQ86V81 257 aaKnown RBP20.75■□□□□ 0.91
CLN3-218ENST00000565688 PRIMPOLQ96LW4 560 aa20.75■□□□□ 0.91
CLN3-218ENST00000565688 ZFP42Q96MM3 310 aa20.75■□□□□ 0.91
CLN3-218ENST00000565688 RPS6KC1Q96S38 1066 aa20.75■□□□□ 0.91
CLN3-218ENST00000565688 COLEC11Q9BWP8 271 aa20.75■□□□□ 0.91
CLN3-218ENST00000565688 APOL6Q9BWW8 343 aa20.75■□□□□ 0.91
CLN3-218ENST00000565688 NXF3Q9H4D5 531 aaKnown RBP20.75■□□□□ 0.91
CLN3-218ENST00000565688 PRMT7Q9NVM4 692 aaPredicted RBP20.75■□□□□ 0.91
CLN3-218ENST00000565688 B4GALT5O43286 388 aa20.74■□□□□ 0.91
CLN3-218ENST00000565688 SEC24BO95487 1268 aa20.74■□□□□ 0.91
CLN3-218ENST00000565688 OR52Z1P0C646 297 aa20.74■□□□□ 0.91
CLN3-218ENST00000565688 RPA1P27694 616 aa20.74■□□□□ 0.91
CLN3-218ENST00000565688 GLUD2P49448 558 aa20.74■□□□□ 0.91
CLN3-218ENST00000565688 RBM25P49756 843 aaKnown RBP20.74■□□□□ 0.91
CLN3-218ENST00000565688 PTPN5P54829 565 aa20.74■□□□□ 0.91
CLN3-218ENST00000565688 HMGN5P82970 282 aaKnown RBP20.74■□□□□ 0.91
CLN3-218ENST00000565688 KANK3Q6NY19 840 aa20.74■□□□□ 0.91
CLN3-218ENST00000565688 PPP4R3CPQ6ZMV5 832 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms