RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 C7orf61Q8IZ16 206 aa18.17■□□□□ 0.5
VPS4A-202ENST00000562754 USP38Q8NB14 1042 aa18.17■□□□□ 0.5
VPS4A-202ENST00000562754 ZBTB45Q96K62 511 aaPredicted RBP18.17■□□□□ 0.5
VPS4A-202ENST00000562754 DUSP9Q99956 384 aaKnown RBP18.17■□□□□ 0.5
VPS4A-202ENST00000562754 CBWD1Q9BRT8 395 aa18.17■□□□□ 0.5
VPS4A-202ENST00000562754 PDZD7Q9H5P4 517 aa18.17■□□□□ 0.5
VPS4A-202ENST00000562754 PTPRHQ9HD43 1115 aa18.17■□□□□ 0.5
VPS4A-202ENST00000562754 PADI3Q9ULW8 664 aa18.17■□□□□ 0.5
VPS4A-202ENST00000562754 TNFSF13BQ9Y275 285 aa18.17■□□□□ 0.5
VPS4A-202ENST00000562754 STYXL1Q9Y6J8 313 aa18.17■□□□□ 0.5
VPS4A-202ENST00000562754 CLIC2O15247 247 aa18.16■□□□□ 0.5
VPS4A-202ENST00000562754 TIMP1P01033 207 aa18.16■□□□□ 0.5
VPS4A-202ENST00000562754 ZNF165P49910 485 aa18.16■□□□□ 0.5
VPS4A-202ENST00000562754 LRRC63Q05C16 580 aa18.16■□□□□ 0.5
VPS4A-202ENST00000562754 FOXR2Q6PJQ5 311 aa18.16■□□□□ 0.5
VPS4A-202ENST00000562754 HS2ST1Q7LGA3 356 aa18.16■□□□□ 0.5
VPS4A-202ENST00000562754 GAS2L3Q86XJ1 694 aa18.16■□□□□ 0.5
VPS4A-202ENST00000562754 ZC3H3Q8IXZ2 948 aaKnown RBP18.16■□□□□ 0.5
VPS4A-202ENST00000562754 AOPEPQ8N6M6 819 aa18.16■□□□□ 0.5
VPS4A-202ENST00000562754 VWCEQ96DN2 955 aa18.16■□□□□ 0.5
VPS4A-202ENST00000562754 BPIFA3Q9BQP9 254 aa18.16■□□□□ 0.5
VPS4A-202ENST00000562754 ANP32EQ9BTT0 268 aa18.16■□□□□ 0.5
VPS4A-202ENST00000562754 HTATIP2Q9BUP3 242 aa18.16■□□□□ 0.5
VPS4A-202ENST00000562754 TMX1Q9H3N1 280 aa18.16■□□□□ 0.5
VPS4A-202ENST00000562754 CBX8Q9HC52 389 aa18.16■□□□□ 0.5
VPS4A-202ENST00000562754 ANKFY1Q9P2R3 1169 aa18.16■□□□□ 0.5
VPS4A-202ENST00000562754 PIN4Q9Y237 131 aaKnown RBP18.16■□□□□ 0.5
VPS4A-202ENST00000562754 A0A1B0GUA9 196 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 BICDL2A1A5D9 508 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 GPR182O15218 404 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 CALUO43852 315 aaPredicted RBP18.15■□□□□ 0.5
VPS4A-202ENST00000562754 TOM1L1O75674 476 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 CXCL10P02778 98 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 NR3C1P04150 777 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 NFX1Q12986 1120 aaKnown RBP18.15■□□□□ 0.5
VPS4A-202ENST00000562754 DSC3Q14574 896 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 IQCB1Q15051 598 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 NFIL3Q16649 462 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 TMEM132AQ24JP5 1023 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 TCTN1Q2MV58 587 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 EDRF1Q3B7T1 1238 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 MPZL3Q6UWV2 235 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 LRRC55Q6ZSA7 311 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 DHX40Q8IX18 779 aaKnown RBP18.15■□□□□ 0.5
VPS4A-202ENST00000562754 C12orf56Q8IXR9 622 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 GOLGA5Q8TBA6 731 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 TSG101Q99816 390 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 IFIH1Q9BYX4 1025 aaKnown RBP18.15■□□□□ 0.5
VPS4A-202ENST00000562754 NAT10Q9H0A0 1025 aaKnown RBP18.15■□□□□ 0.5
VPS4A-202ENST00000562754 CDT1Q9H211 546 aa18.15■□□□□ 0.5
VPS4A-202ENST00000562754 A0A0B4J269 797 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 N4BP3O15049 544 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 MGEA5O60502 916 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 RAG1P15918 1043 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 GARTP22102 1010 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 AXLP30530 894 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 SNRPFP62306 86 aaKnown RBP18.14■□□□□ 0.49
VPS4A-202ENST00000562754 NCAPHQ15003 741 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 ZNF568Q3ZCX4 644 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 PLEKHG4Q58EX7 1191 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 UBXN11Q5T124 520 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 ARMCX5Q6P1M9 558 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 NOTUMQ6P988 496 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 ZBTB33Q86T24 672 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 ZSWIM2Q8NEG5 633 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 ENOX1Q8TC92 643 aaKnown RBP18.14■□□□□ 0.49
VPS4A-202ENST00000562754 FAM200AQ8TCP9 573 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 PCIF1Q9H4Z3 704 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 DMAC2Q9NW81 257 aa18.14■□□□□ 0.49
VPS4A-202ENST00000562754 CGNQ9P2M7 1197 aaKnown RBP18.14■□□□□ 0.49
VPS4A-202ENST00000562754 FAM189A1O60320 539 aa18.13■□□□□ 0.49
VPS4A-202ENST00000562754 PARNO95453 639 aaKnown RBP18.13■□□□□ 0.49
VPS4A-202ENST00000562754 CAVIN2O95810 425 aa18.13■□□□□ 0.49
VPS4A-202ENST00000562754 HARSP12081 509 aaKnown RBP18.13■□□□□ 0.49
VPS4A-202ENST00000562754 NR2F2P24468 414 aa18.13■□□□□ 0.49
VPS4A-202ENST00000562754 CYP2J2P51589 502 aa18.13■□□□□ 0.49
VPS4A-202ENST00000562754 MYL5Q02045 173 aa18.13■□□□□ 0.49
VPS4A-202ENST00000562754 MCL1Q07820 350 aa18.13■□□□□ 0.49
VPS4A-202ENST00000562754 NOLC1Q14978 699 aaKnown RBP eCLIP18.13■□□□□ 0.49
VPS4A-202ENST00000562754 DEFB128Q7Z7B8 93 aa18.13■□□□□ 0.49
VPS4A-202ENST00000562754 SLC9A9Q8IVB4 645 aa18.13■□□□□ 0.49
VPS4A-202ENST00000562754 LINC01599Q8WXQ3 324 aa18.13■□□□□ 0.49
VPS4A-202ENST00000562754 POMGNT1Q8WZA1 660 aa18.13■□□□□ 0.49
VPS4A-202ENST00000562754 SAAL1Q96ER3 474 aa18.13■□□□□ 0.49
VPS4A-202ENST00000562754 EEF2KMTQ96G04 330 aa18.13■□□□□ 0.49
VPS4A-202ENST00000562754 EIF2AQ9BY44 585 aaKnown RBP18.13■□□□□ 0.49
VPS4A-202ENST00000562754 HSPBP1Q9NZL4 362 aa18.13■□□□□ 0.49
VPS4A-202ENST00000562754 MICAL3Q7RTP6 2002 aa18.13■□□□□ 0.49
VPS4A-202ENST00000562754 CLDN3O15551 220 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 EVI5O60447 810 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 NPTXRO95502 500 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 MCF2P10911 925 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 RFC2P35250 354 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 MATR3P43243 847 aaKnown RBP eCLIP18.12■□□□□ 0.49
VPS4A-202ENST00000562754 NCBP1Q09161 790 aaKnown RBP18.12■□□□□ 0.49
VPS4A-202ENST00000562754 ZBTB41Q5SVQ8 909 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 SPATA1Q5VX52 437 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 SLFN12LQ6IEE8 588 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 MFSD5Q6N075 450 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 SLC27A1Q6PCB7 646 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms